Enterobacter hormaechei NCTC 9394: ENC_34000
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Entry
ENC_34000 CDS
T02615
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eclo
Enterobacter hormaechei NCTC 9394
Pathway
eclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENC_34000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclo03019
]
ENC_34000
03009 Ribosome biogenesis [BR:
eclo03009
]
ENC_34000
Enzymes [BR:
eclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ENC_34000
Messenger RNA biogenesis [BR:
eclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ENC_34000
Ribosome biogenesis [BR:
eclo03009
]
Prokaryotic type
rRNA helicases
ENC_34000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBK86743
LinkDB
All DBs
Position
complement(3445781..3447676)
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AA seq
631 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAF
SLPLLNNIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEAELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSQIQPVAEGEELD
METLAAALLKMAQGERSLIVPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGRGFGGERREGGRSEGR
GGEGRRFSGERRENRGPRREEGASRRRFGDA
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgtatcccacacctg
ctttctggtcgtgacgtgctgggcatggcccagactggtagcggtaaaaccgcagcattc
tcgctgccgctgctgaacaacattgatccggacctgcgcgcgccgcagatcctcgtcctg
gctccaacccgtgaactggctgttcaggttgctgaagccatgacggaattctctaaacat
atgcgcggcgtaaacgtggtagccctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgccagggtccacagattgttgtcggtacgccgggccgtctgctggatcacctg
aagcgcggtaccctggacctctctaaactgagcggtctggtactggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgtagaaaccatcatggcgcagatcccggaaggt
caccagaccgctctgttctctgcaaccatgccagaagcgatccgtcgcattacccgccgc
ttcatgaaagagccgcaggaagtgcgcattcagtccagcgtgaccactcgcccggacatc
agccagagctactggtctgtatacggcatgcgcaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctggaa
gtggctgaagccctggagcgtagcggctacaacagcgcagcgctgaacggcgacatgaac
caggccctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctgatt
gcaaccgacgtggcagcacgtggcctggacgttgagcgtatcagcctggttgtaaactac
gatatcccgatggactccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggt
cgtgcaggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatt
gaacgcaccatgaagctgaccattccagaagccgagctgccaaacgcagaactgctgggc
aaacgccgtctggaaaaattcgccgcgaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctgtcccagatccagcctgtcgctgaaggcgaagagctggac
atggaaaccctggccgcagcactgctgaaaatggcgcagggcgaacgtagcctgatcgtg
ccacctgatgcgccgatgcgtcctaagcgtgagttccgtgaccgtgacgatcgcttcgaa
cgtcgtggcgaccgtaacgaccgtggtccacgcggtgaccgtccagagcgtggtggtgaa
gaccgtccacgtcgcgagcgtcgtgacgctggcgaaatggaactgtatcgcattgaagtg
ggccgtgatgatggtgttgaagttcgtcacatcgttggcgcgatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggttcccactccaccatcgagctg
ccaaaaggcatgccgggcgaagtactgcaacactttactcgcacccgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgcacagccacgtcctgaccgtggcggcgaacgt
cgtggcggtggtcgcggtttcggtggcgagcgtcgtgaaggcggtcgcagcgaaggtcgc
ggtggtgaaggccgtcgtttctccggtgagcgccgcgaaaaccgtggtccacgccgtgaa
gaaggcgccagccgtcgtcgtttcggtgacgcgtaa
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