Epargyreus clarus: 140742825
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Entry
140742825 CDS
T11494
Symbol
tst
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
eclr Epargyreus clarus
Pathway
eclr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eclr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140742825 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclr03019
]
140742825 (tst)
Enzymes [BR:
eclr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140742825 (tst)
Messenger RNA biogenesis [BR:
eclr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
140742825 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
140742825 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
CHD1-like_C
LIF1_N
ATPase_2
Motif
Other DBs
NCBI-GeneID:
140742825
NCBI-ProteinID:
XP_072929955
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MSSASRDSFADLKIPEPPIGEDIDEHAKSYLQQAEKLSIHLWERLQTHWPTKLDNKTIYN
YEDYDIHSTLQLPRDMTTGEIISVDELEEIDLPVEDDEENLSMTRPPLPTSVATRGTTTQ
NPFLPAGFEEELLKLQEKSVQEITLDLDNNEPGKLFGEALITSLPDSEHTVLFAEDGFTL
LTEEEKQARIEAKEAETRDIELPVNINIEEMFDNNVTSAGFWKDEDEPPNQQPSKEEKPK
AVIENNADDDNFLQSTIIQPPVELPELPVLMIGGPSIKVGVTSTQYAEVIDVTLPVPDFR
ERIKNMAHEFPFELDNFQKQAIIKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNYTKAI
YTSPIKALSNQKYNDFNKTFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDL
EFVIFDEVHYINNAERGYVWEEVLILLPAHVVIVMLSATVPNTLQFADWVGRTKGHKVYV
VSTPKRPVPLCHYLYTGSGGKSKHERFLVLDQEGNFQLRGYNEAVAAKKARENDYKKGFG
PKGGKQYMNPKAEQTMWVALIDHLKTNDKLPVVAFTLSRNRCDQNAENLMSVDLTTGKEK
SHIRSFFNRCLQRLKEPDRRLPQIIRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGHVK
ILFATETFAMGVNMPARTVIFDEVSKYDGVASRTLVPAEYIQMAGRAGRRGLDKTGTVII
LCKDEVPDQMTLKGMMLGIPQKLSSQFRLTYAMILSLLRAATVTVLGMMKRSFREFDQIC
QVDKNKKQLELAEKEYEKKCSIPLAPHLTPLTTFYDAVTAYIGVLNEIMPILLTQPKVAK
ELVAGKVIVFSAGPYINQLGILLNTTGPRLTPYKVLALDTVEKDTSNYKFDVDETWYRCL
SFSAQHDYIGTDESTINHTILCIASKNIISITKTNFKIDPNIIIKDWENRQIPRFRDAPV
GSSCASAVQELLRLSHAVRSGATTLDYVSLTHSLAVTDGEILSALDKMKMLEAQIQSVKK
TTDIANFKAEFAIVYERKQCERIRDKYRHLLSHENLALYPDYQRRLLVLRELNYIDERDG
VILKGRVACGMGTNELIISELVFRNVFTHLIPAEIAALLSCFVFQAKTNVEAQLTPKLAE
CVRTIEEIDAEITQLESRYLVEQFEGSDRLNFGLVRVVYEWALQKPFADIMDLTDVQEGI
IVRCIQQLHELLVDVKDAAVAIGDTKLQAKMTDASVAIKRDIVFAASLYTTGKDALS
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggccagtagagattcttttgctgatctaaagatcccagagccacccatagga
gaagacatcgatgaacatgcaaagagttacttgcagcaagcagaaaaattgtctattcac
ttatgggaaaggttacaaacccactggcctaccaaacttgataataagaccatttacaac
tatgaagattatgatattcatagtaccctacagcttcccagagacatgaccacaggcgag
ataataagtgtcgatgagcttgaagaaattgatctaccggttgaagatgatgaagagaat
ctctcaatgacacgaccaccactgccaacgagcgtggccaccagaggcacaactacacag
aacccattcctaccagcagggtttgaagaggaactcttaaagctgcaagagaagtcggtt
caagagatcacattggatcttgataataatgaaccggggaaactgtttggtgaagcttta
ataacttccttgccggattcagagcatacagtcttatttgctgaagatgggttcacactt
ctgactgaggaagagaaacaggcaagaatagaagcaaaagaggctgagaccagagacata
gagctaccagtcaacattaatatagaagaaatgtttgataacaatgtgacttcagcaggt
ttctggaaagatgaagatgagccacccaaccaacaacctagcaaagaagaaaaaccaaaa
gcagttattgaaaataacgcggatgatgataatttcctccagagcacaatcatacaacct
ccagtggaattaccagaattaccagtactgatgataggtggaccttcaataaaagtcggg
gtgacgtctacccagtatgcagaagtcatagatgtcacgctaccagtacctgatttcagg
gagaggattaaaaatatggcgcacgagttcccattcgaattggataacttccaaaaacag
gctataataaagttagaagaaggacatcacgtgttcgtcgcagcgcacacgtcagcgggc
aagaccgtagtcgccgaatacgccatcgcaatgtcgaggcgcaactataccaaagcaatc
tacacatcaccgattaaggcattatcgaaccaaaagtacaacgacttcaacaaaaccttc
ggggaggttggtcttctgactggtgaccttcagatcaacgcaaccgcctcttgcctggtg
atgaccaccgagattctaaggtctatgctgtactgtggctctgacgtcacgagagatctt
gagtttgttatatttgatgaagtccattatattaataatgcagagcgaggctacgtatgg
gaagaagtgctcatattattaccggctcacgtggtgatagtgatgttgagcgcgacggtg
ccgaacacgctgcagttcgcggactgggtggggcggaccaagggccacaaggtgtacgtg
gtctccacgcccaagcggccggtgccgctctgccactatctgtacacaggttccggtggt
aaatccaaacacgaacggttcctagtattagaccaagaaggtaacttccagctcaggggg
tataatgaggcagttgcagccaagaaggcaagggagaacgattacaagaagggctttggg
ccaaaaggtggcaagcagtacatgaatccaaaagccgagcagaccatgtgggtggctctt
atagatcatctaaaaaccaacgacaaactacctgtagtcgcctttacactctcacgtaat
aggtgtgatcaaaatgcagagaatttgatgtcggtggacctcacgactggcaaggagaag
agtcacatccgatcattcttcaatagatgcctccagagactgaaggaacctgatcgtaga
ctcccacagattattcgcttgcaaagggtcttagagaatggcataggtgttcatcacagc
ggtatactgccattgttgaaggaaattgttgaaatgttattccagtcaggacatgtgaag
atcctgttcgcgacggagacgttcgcgatgggcgtgaacatgccggcgcgcacggtgatc
ttcgacgaggtcagcaagtacgacggcgtggcctcgcgcacgctcgtgcccgccgagtac
atacagatggcgggcagggcgggccggcggggtcttgacaagacaggcacagtgataatt
ctgtgcaaggacgaagtccctgaccagatgacgctgaagggcatgatgctgggcatccca
cagaagctgtcctcacaatttagattgacctatgctatgatactaagtcttttacgagca
gcaacggtaacagtgctgggtatgatgaagcgttcgttccgcgagttcgaccagatctgt
caggtggataaaaacaagaaacaattggaactagcagagaaagaatacgagaagaagtgc
agcattcccctagcaccccacttaaccccgttgacaacgttctatgatgcggtcacagcg
tacataggcgtgttgaacgagatcatgcccatattgctcactcagccgaaggttgcgaag
gagttggttgcggggaaagtaattgtgttctcagctgggccatatattaatcagctgggg
atattgttgaatactactggtccccgactgaccccatacaaggtactagctctggacact
gtagagaaagacaccagtaactacaagttcgatgtagatgaaacctggtatcgatgcctc
agcttctctgcgcagcatgattatataggcacggatgaaagcaccatcaaccatacaatt
ttgtgtatagcgtcaaagaacataatatcgattaccaaaacgaatttcaaaattgatccc
aatatcattattaaagattgggagaatagacaaattccaaggttccgcgacgccccagtg
ggttcgagctgtgccagtgcagtacaagagctcctacggctatcgcacgcggttcgtagc
ggtgccactacattagattacgtcagcctcacgcactctctcgcagtcaccgacggggag
atactctctgccttggacaagatgaagatgctagaggcgcaaatacaatcggtaaagaag
acaacggacatagcgaacttcaaagcggagttcgcaatcgtatacgaacgaaaacagtgc
gagcgtatccgcgacaaatacaggcatttgctgtcccacgagaacctagctctgtacccc
gactaccaaagacgactgctagtgttacgcgaactgaactatatagatgaacgagacgga
gttattcttaaagggcgtgtcgcttgcggaatgggaacgaatgaactgatcatatcggag
ttggtgttccgtaatgtgttcactcacctgattccagcggagatagccgctctgctcagc
tgtttcgtatttcaagctaaaaccaacgtggaggcacagttgacgccgaaattggcggaa
tgcgtgcgaactattgaggaaattgatgcggaaataacgcagctggaatctagatacctg
gtggaacaattcgaaggttctgacagactgaacttcgggctcgtaagagtggtgtatgag
tgggcgctgcagaaacccttcgcagacataatggacctcacggatgtacaagagggcatc
attgtgaggtgcatccaacagttgcatgagctgttagtcgacgtaaaagacgcagcggtg
gcgatcggagatacgaaattgcaagcgaagatgactgatgcgtccgttgccatcaagagg
gacatcgtgtttgccgccagtttatacaccactgggaaagatgctttgtcctaa
DBGET
integrated database retrieval system
