Epargyreus clarus: 140748897
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Entry
140748897 CDS
T11494
Symbol
Smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
eclr Epargyreus clarus
Pathway
eclr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eclr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
140748897 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclr03019
]
140748897 (Smg5)
03032 DNA replication proteins [BR:
eclr03032
]
140748897 (Smg5)
Messenger RNA biogenesis [BR:
eclr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
140748897 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
140748897 (Smg5)
DNA replication proteins [BR:
eclr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
140748897 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
140748897
NCBI-ProteinID:
XP_072937910
LinkDB
All DBs
Position
Unknown
AA seq
982 aa
AA seq
DB search
MKNESFELLESSSTSERTERAKKIYRYITDVARRLGDVSVDGRPLADLFTTNNEVLRQKL
RDNCEKLFFLDPLNYGKKSLELLWRKVYYEVVCSAKKLREIDSKYDSYLFTHVVSGIGHF
QHIITRIQSEMNFQFKELDYLPLHNEDDDEVVITKFTEEESQVGRSAIYSCLIYLGDLSR
YQTEMFNVFEASIAARYYLQAAQIDLTSGMPFNQLGNLFVDKNYNLDSVCCYIHCLSTLV
PFDGGLGNLTKIFEKNRQFCDELIIPEAFTQAEHIQITIANFLLLIEIWYLGKDDGHVTQ
ICSTVAQQLKIALDFNKMPLPNINNNYKDFIQAMEEENVNPTYMNFNIIHNMVQICLFTI
AKMNEIDNLKSFACKAFTLALLSQILQKLLKQLESMGLKSPACKYIPKFQSVPVKEIVKE
ENKIEPKPLQEEIIPNAVTINGKDDHVEILPKENGDIKIGSNGDVKTNCKKPLAKRRRRR
RVASSGSSDLSDEETESSEADSDKSCSDPDLSDSSYESEEDSKSEDSFYDASDNDGEMTE
VVNGNAKTTEPIQEEIISKENEVKSIEDGSMNKDKKCDDGTLNTHALHQFLLGNNILPSI
KLLQDWILTEKDLILSCGESGDSLFKCVVDLLNIFIYYFGSVDHDALNKEEFKVFNTARI
IAKKFKLEYKTIPLPEDIALRGTNIGKYDKDAAEWQILDKYKPSVYEENIIRILNFIDFG
NQIAKIVPRIRYNKYLKVFYVKKALPPRLTVKLNTKKCREWHNSKKQEAEAGEGGLPQRM
GRLWLASQVRELERTGQGPEPTLLVLDSAVLNKFLRRIKQLMRATNFVFLVPTVVLQELD
NLKCERSSARDAIRWLEAELQSGSRFLKTQRPGQSRPLNLIKYPRKAPPNVYHFIEILEF
CNHFTAEEKQIHSGNGDSDHPLHGKTAPLLILLVGNELGTGEEQCKDFSFTGAAQAAGIS
VEYFVDFYAKWRQTTHKSGKKR
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacgagtcctttgaacttttggagtccagcagtacgtctgaacgtactgaacgg
gcaaaaaaaatttatcgctacattactgatgttgcacgtcgacttggagatgtctcggtg
gatggtcgcccccttgctgatctatttaccaccaacaatgaagtgctgcgacagaaatta
agagataattgtgaaaaattattcttcttagatccattgaattatggtaaaaagtcactt
gagttactgtggcggaaagtttactatgaggttgtgtgctctgctaaaaaattgagagag
attgacagcaaatatgacagttatttgttcacacatgttgtgtccgggataggccacttc
caacacatcattacgagaatacagtcagagatgaactttcagtttaaagagttggactac
ttaccactgcataatgaggatgatgatgaggttgtcatcactaaattcactgaagaagaa
agccaagttggtcgctcggcaatatattcctgccttatatatctaggggacctcagtcgc
tatcaaacggaaatgtttaatgttttcgaggcttccattgcagctcgctactacttacaa
gcagcacaaattgacttgacttcaggaatgccatttaaccaattggggaatttgtttgtt
gacaaaaattataacctagattcggtgtgttgctacatacattgcttgagtactttagta
ccatttgatgggggattgggtaatttaactaagatattcgagaaaaacagacaattttgc
gatgaacttataattccagaagctttcacacaagcggaacatattcaaattacaattgct
aactttctactgctcattgaaatatggtatcttggtaaagacgatggccatgtaactcaa
atttgcagcacagttgcacaacaacttaaaattgccttggattttaataaaatgccactt
ccaaacataaataacaattacaaggattttattcaagcaatggaagaggagaatgtcaat
cctacttacatgaactttaatatcattcacaatatggttcaaatttgtctgttcacaatt
gctaaaatgaatgaaattgataatcttaaatcttttgcttgcaaagcatttacactggct
ttgttatcacaaatactacagaaacttctaaaacaactagaatcaatgggtctcaaaagt
ccagcgtgcaaatatataccaaagttccaatctgttccggtaaaagaaattgtgaaagag
gaaaacaaaattgaacctaaaccattacaggaagaaattattccaaatgcagtgacaatc
aatggaaaagatgatcacgttgaaattttacctaaggagaatggagatatcaaaattgga
tccaatggtgatgtaaagaccaattgtaagaaacccttggctaaaaggcgtcggagaagg
cgtgttgcgtcatctgggagttcagatttaagtgatgaagaaacagaaagcagcgaagct
gattcagacaaatcttgttcagatcctgatctatcggattctagctatgaatcggaggag
gattcaaaaagtgaagactctttttatgatgcctctgataatgatggggaaatgactgaa
gttgtaaatggtaacgctaaaacaactgaaccgattcaagaagaaataatttcaaaagaa
aatgaagtaaagtcaattgaagatggtagtatgaataaagataaaaaatgtgatgatgga
actttgaacacccatgctttacatcagtttttactgggtaacaacatacttcccagtatt
aagttacttcaagactggatccttacagagaaagacttaatcttgtcttgtggagaaagt
ggggactcattgtttaaatgcgttgttgatttgctaaatattttcatctattattttggt
tctgttgaccatgatgcacttaataaagaggaatttaaagtatttaatactgcaaggatt
attgctaagaaatttaaattggaatataaaacaattcctctgcctgaagatattgctttg
cgtggaactaatattggcaaatatgataaagatgctgccgaatggcagattttggataaa
tacaaaccttctgtatatgaggaaaatattataagaattttaaatttcatagattttggc
aatcaaattgctaaaattgtacctcgtattcgctataacaaatacctaaaagtcttctat
gtaaagaaagctcttcctccgaggttgacagtaaaactcaatactaaaaaatgcagggaa
tggcacaactcaaaaaaacaggaggcagaagcaggtgaaggtggcctaccacagcggatg
gggcgactttggctggcatcacaagtgagggagttggagcgcactgggcaggggcccgag
ccgacactgctagtcctagactctgctgtgctaaataaattcttgcgtcgcattaaacag
ctgatgcgtgcaacgaactttgtttttcttgtacctactgttgtgttacaagaactggat
aatttgaagtgcgagagaagttcagcgcgcgatgcgattcgttggctagaggctgaactt
cagagcggttcacgtttcctcaagacacaacggcccggccaatcgaggcccctgaatcta
ataaagtaccctcgcaaggcgcctccgaatgtttatcatttcattgaaattttggaattc
tgtaaccacttcacagctgaagaaaaacaaattcatagcggtaatggcgattccgaccac
ccactacacgggaaaacagcgccgctcctcattctgctcgtcggcaatgaacttggtact
ggtgaagaacaatgcaaggatttcagctttacgggtgcggcccaagcagctggtatttct
gtagaatactttgtggacttttacgcaaagtggcgccagactactcacaaaagtgggaag
aaaagatga
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