Epargyreus clarus: 140750691
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Entry
140750691 CDS
T11494
Symbol
pcm
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
eclr Epargyreus clarus
Pathway
eclr03008
Ribosome biogenesis in eukaryotes
eclr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eclr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
140750691 (pcm)
09123 Folding, sorting and degradation
03018 RNA degradation
140750691 (pcm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclr03019
]
140750691 (pcm)
03009 Ribosome biogenesis [BR:
eclr03009
]
140750691 (pcm)
03016 Transfer RNA biogenesis [BR:
eclr03016
]
140750691 (pcm)
03036 Chromosome and associated proteins [BR:
eclr03036
]
140750691 (pcm)
Messenger RNA biogenesis [BR:
eclr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
140750691 (pcm)
mRNA degradation factors
5'-3' decay
5' exonucleases
140750691 (pcm)
Ribosome biogenesis [BR:
eclr03009
]
Eukaryotic type
Pre-60S particles
RNases
140750691 (pcm)
Transfer RNA biogenesis [BR:
eclr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
140750691 (pcm)
Chromosome and associated proteins [BR:
eclr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
140750691 (pcm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
XRN1_D2_D3
SH3_12
Mob1_phocein
Motif
Other DBs
NCBI-GeneID:
140750691
NCBI-ProteinID:
XP_072940485
LinkDB
All DBs
Position
Unknown
AA seq
1474 aa
AA seq
DB search
MGVPKFFRYTSERYPCLNELVKQYQIPDFDNMYLDMNGIIHNCSHPDDSNPHFRITEEKI
FQDIFHYIGILFQIIKPKKLFFMAIDGVAPRAKMNQQRGRRFRSAREAEKLEEDAKAKGE
VLPEEKRFDSNCITPGTVFMARLHEQLKYFVKHKMSTDPLWSKVKVVLSGHETPGEGEHK
IMDYIRWARSQADYDPNTRHCLYGLDADLIMLGMCTHEPHFALLREEVKFGKTTQRATSP
EQTNFYLLHLSLLREYLDQEFIEIKDKLPFEYDIEKIVDDWVLMGFLVGNDFIPNLPNMH
ISNDALPLLYKTYMAVLPTLDGYINEAGDLNLGRFEAFMQELAKIDKEKFQDTYTDLKYF
EAKTGRRPNANERKQYKPNNDDTFNVNIEDIKANEPDDELQALIDATQDMLMDDIEDGEE
YEETSDEEANFEMEFVLHKMDYYMNKLDYSKVTPEVLANQAEGYVRAIQWNLFYYYKGCP
SWCWYYPHHYAPYISDIKGFKDLKITFDIGEPFKPFEQLLAVLPSASKHLLPAPFHDLMT
DEDSPIVHYYPINFETDLNGKKNDWEAVVLIPFIDEVNLLSAMEPCYKRLTEEEIKRNTH
GPMLVYNWTANDLGPIQAPEYFPRITSCHALEKEVWRHEIFVPDNELKRGMLPNAKRDLL
FPGFPTMRHLKYKTSIKKCRVKVFDQPSRNESMIVELLPEKDTNPKLETIAQELLGKVIW
VGWPHLTRAKVVSVSNEKMRLHHVENQNNNDNAVVNGLPHYTVEHNNGNLHKQWISERST
IIEHNMNRLGIELGDVHVIVHAVNLKGYKYVVADASRMAVEETWCAVACGYALQTAVSAA
SAVPPPARYSTPRHAYPPGDLVFLRTLGPYYGCLATVIDTEGVRGCRIKVSLKECVEPTP
TAHSVASSYKSANHAAASCGISAQMLSRITGTILVIMGERNDLPVETQSKINLGLNLKFN
KKNQEVSGYSRRCPVSGAWQYSARCVALVRNYAETFPELFDRLAHTMGRDVFFESDLWPG
QLGEGKPQEVQQWLKAQPHATAARRPCGSEALEPEEMRALRDSLRRQLLLLARREKPLTL
QVKWNLLYKPELHEGNISPDPTADFKLYDRVVCVSRNMTVPLGAKGTVTAIYQPSDCNTV
RLSDKMNAEPTYQVMFDEPFPGAQGEELFEEMRFYRMMPTNMLNISFGRKLRGNVSPVDD
EPFGLGTPRTALRREDGHHSAFANYSPPRDIKTPVADNRIPTNNNAVKNDTEVQDSATHL
LRSLLKISEDENTKKTKPAPPVEQNWRSKNNVSTATKAQRPDWRQENNSTFNNNKPKQQS
QQQNATLLEWTNSSFKQSQPPIPPYPSFGPPGGSGQRFPSSLPSVEAALSLVPSWAQPQT
SQPQPAATANTQNHVDKVKTPFVPLQVQTSRRRSQNQSGSSVRKDLDGLPAPISVLPEPQ
STSNMGQQKQKDPESKPQRRRRLRIAANLPGLQD
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccgaaattctttaggtataccagtgagaggtatccctgtttgaatgagctc
gtgaaacagtatcagatacctgactttgacaatatgtacttggacatgaatggtatcatt
cacaactgctctcacccggacgactccaacccacactttcgtatcacggaggagaagata
ttccaggatatattccactacatcggaatcctgttccaaatcataaagcccaagaagcta
ttcttcatggccattgacggtgtggctccgagagccaagatgaaccagcaacgaggaagg
agattcagatcagcgagagaagcggagaagttagaagaagatgccaaagctaaaggagaa
gttttacctgaggagaagcgtttcgacagcaactgtataacgcctggcactgtgtttatg
gcgcgtttgcacgaacagttgaaatactttgtcaagcataagatgtcgacagacccgctg
tggtcgaaagtcaaagttgtgctctcaggtcatgagacgccgggtgaaggcgagcacaag
ataatggactacatccgctgggcgcgctcgcaggcggactacgaccccaacacgcggcac
tgcctgtacgggctggacgcggacctcatcatgctcggcatgtgcacgcacgagccgcac
ttcgcgctgctcagggaggaggtgaaattcggcaaaacgactcaacgtgcgacaagtcca
gaacaaaccaacttctatcttctccacttatctctactcagagaatacttagaccaggag
ttcatagaaatcaaagacaagttacccttcgagtatgatatagaaaaaattgtggacgat
tgggtactaatggggttcttagtgggcaatgacttcattcccaatttaccaaatatgcac
atcagtaatgacgcgctgcctctcttgtataagacttacatggcagtgttgcccacgtta
gatggttacattaacgaagcaggtgacttaaacctaggcaggttcgaagcatttatgcag
gaactagctaagattgacaaggaaaagttccaggacacatatacagatttaaaatatttc
gaggctaaaactggcaggcggcctaacgcaaatgaaaggaaacagtataaacccaacaac
gatgacacattcaatgtgaacattgaagatataaaagctaatgagccagatgatgagcta
caggcgctcatagatgctacacaagatatgttaatggacgatatagaggatggtgaagaa
tatgaagaaactagtgatgaggaagcaaacttcgaaatggagtttgtgttacacaagatg
gactattacatgaacaagttggattactccaaagtaactcctgaggtgctagcgaaccaa
gcggagggctacgtgcgggcgatccagtggaacctgttctattactacaagggctgtccg
tcttggtgctggtactatccgcaccactacgcgccctacatctccgacatcaagggcttc
aaggacctgaagatcacgtttgatatcggcgagcccttcaagccttttgaacagctgtta
gcagttctaccatctgcaagcaagcatctcctgcccgcgccgttccacgatctcatgacg
gacgaagactcccccatagtgcactactatccaatcaacttcgaaacggatctgaacggc
aagaaaaatgattgggaggctgtagttttaataccctttattgatgaggtaaatctatta
tcggcaatggaaccctgctataagaggctcactgaagaggaaatcaagcgcaacacacac
ggcccaatgcttgtttacaattggacagccaatgatcttggtccgatccaagcgccggaa
tatttcccgcggataacatcgtgccacgcgctagagaaggaggtgtggcgccacgagatc
ttcgtgccagataatgagctgaagagaggcatgctgcccaatgccaagcgggacctgctg
ttccccggcttcccgactatgaggcatttgaagtataagacaagcataaagaagtgcaga
gtgaaggtgttcgaccagccttcgcgcaacgagagcatgatagtggagctgttgccggaa
aaagacaccaaccccaaactggagaccattgctcaggagctgctcggcaaggtcatctgg
gtgggctggccacatctcactagggccaaggtagtatcagtttcaaacgagaagatgcgt
ctccaccacgtggaaaatcagaacaacaatgacaatgcggtggtgaacggtttgccgcac
tacactgtggagcacaacaatgggaatctccataaacagtggatttctgaacggtctact
attattgaacacaacatgaatcgtctcggcatagagttgggagatgtgcatgtgatagta
catgcagtcaatttaaaaggctacaagtacgtggtagcggacgcgtcccgcatggcggtg
gaggagacgtggtgtgccgtagcgtgcggctacgcgctgcagacggccgtgagcgcggcc
agcgccgtgccgccgcccgcgcgctacagcacgccgcgccacgcctacccgcccggcgac
ctggtgttcctgcgcacgctcggcccctactacggctgcctggccacggtaatagacaca
gagggtgtccgaggctgccgtatcaaggtgtctttgaaggagtgcgtggagcccacgccc
actgctcattcggtggcgtcttcgtacaaatccgcgaaccacgccgccgcatcgtgtggt
atatcagcacaaatgctgtctcgtatcactggcacgatactcgtgataatgggcgagcgg
aacgacctgcccgttgaaacgcagagcaagattaatcttggtctcaacttgaagtttaac
aaaaagaatcaggaggtgtccggctactctcgtcgttgtccagtatcgggtgcgtggcag
tactcggcgcgctgtgtggcgctagtgcggaactacgcggaaacgttccccgagctgttc
gaccgcctcgcgcacaccatgggccgcgacgtgttcttcgagagcgacctctggcctgga
cagctgggcgaaggcaagcctcaagaggtgcagcagtggctgaaggcgcagcctcatgcc
acggcggcgcggcggccgtgcggctccgaggcgctggagccggaggagatgcgcgcgctg
cgggactcgctgcggcgacagctgctgctgctcgcgcgcagggagaagccgctcacgctg
caggtcaagtggaacctgctgtacaagccggagctacacgaaggcaacatatcgccggat
ccgaccgccgacttcaagctgtacgaccgcgtggtgtgcgtgtcgcgcaacatgacggtg
ccgctgggcgccaagggcaccgtgaccgcgatataccagcccagcgactgcaacacggtg
cggctgtccgacaagatgaacgcggagcccacgtaccaagtgatgttcgacgagcccttc
cccggcgcgcagggggaggagctgttcgaggagatgaggttttatagaatgatgccgacc
aacatgctgaacatatcgttcggccgcaagctgcgcggtaatgtgagccccgtggacgac
gagccattcgggttaggcacgccccgcactgcgctgcgacgtgaggacggacaccactcc
gcattcgctaactatagtcccccgagagatatcaaaactcccgtggcagataatcgtatc
cctacgaacaacaatgctgtgaagaatgacactgaagtgcaggacagcgcaacacattta
ttaagaagtttactgaagatcagtgaggacgaaaatactaagaagactaaacccgcaccc
ccagtagagcagaattggaggtctaaaaacaatgtttcaactgcgactaaggcacaacga
ccggattggcgacaggaaaacaacagtacattcaacaacaacaagccgaaacaacagtcg
caacaacagaacgcaacattgttagaatggactaatagtagttttaagcagagccagccg
ccgataccgccgtacccgtcgttcggtccgccgggcggcagcggccagcgcttccccagc
tcgctgcccagcgtggaggcggcgctcagcctcgtgcccagctgggcacagccacagacc
tcacagcctcaaccggccgccacagccaacacccaaaaccatgtcgacaaagtgaaaaca
ccgttcgtcccgctacaagttcaaactagtcgaaggcgatctcaaaatcaaagtggctcg
tcggttagaaaagacctggacgggttaccggcgccgatatcagtattgcccgaaccccag
tctactagtaatatgggccaacagaaacagaaggaccctgaatcgaagccacaaaggagg
aggcggctaagaatagcagccaacctgcccggcctacaggactag
DBGET
integrated database retrieval system
