Epargyreus clarus: 140757655
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Entry
140757655 CDS
T11494
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
eclr
Epargyreus clarus
Pathway
eclr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eclr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140757655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eclr03041
]
140757655
Enzymes [BR:
eclr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
140757655
Spliceosome [BR:
eclr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140757655
Complex B
140757655
Complex C
U2 SnRNP specific factors
140757655
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
140757655
NCBI-ProteinID:
XP_072949625
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MSYNSGGSGGKGFGFAGFTMPKRNPSNISLHAVPPPSTPMHAVPPPASGLSKQGYSTMSA
ITQNAVTGNFGSLGKKRAKTEDEYFDDDDEPPTPALAYIPAPGSPTNAKASSSRANEDDE
EDPLDAYMAGLEQQAAKDLVASKENEASGKGDSGRGTRGDIDEMDDEESYYKYMEDNPLT
TADDGSDVEIEYDEDGNPIPPPKKKFIDPLPPIDHSEITYEPFEKNFYTPHEEIEKLTAQ
QVDDLKKHLGVKISGPDPPRPVTSFAHLGFDEQLMKAIRKSEYTQPTPIQAAGVPAALSG
RDLIGIARTGSGKTAAFLWPLLVHIMDQKELAPGDGPIGLILAPTRELAQQIYMEAKRFG
KVYNIRCICAYGGGSKWEQTKALEGGGAEIVVGTPGRIIDLIKSKATTLNRVTYLVLDEA
DRMFDMGFEPQVRSICAHVRPERQALLFSATFPRRVERLARDALHDPVRVQHGAAGEASH
LVSQHVRIFNKPDEKWSWLLKNLVEFLSAGSILIFVTKKLEAEQTAANLGVQQYDALLLH
GDMDQADRNKVITAFKRHENSILVATDVAARGLDIPHIRTVINYTVARDIDTHTHRVGRT
GRAGVRGHAYTLLSRDTDREFAGHLLRNLEGVQQEVPEELMQLAMQSSWFRKSRFKKGKG
KNLNIGGCGLGYKERPGLPPAVEEPAVERAAGPATDRLASLKQAFRTQYNQFTASTDHSW
EQTRPALQPGVNAPAAPAPERTRRGGKRSRWE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagttataattcgggtggaagtggcggcaaaggtttcggcttcgcggggttcacaatg
ccgaagcgcaacccgtcgaatatatcgcttcacgcggtgcctccgccctcgacccctatg
cacgcagtgccgccgccggccagcgggctctcgaagcagggctactccactatgagcgcg
atcacacagaacgctgtcacgggcaactttggctccctcgggaagaagagggctaaaaca
gaggatgaatattttgatgatgatgatgagccacccacaccagctctagcgtacatccct
gctcccggcagtcccactaatgcaaaagcctccagttccagagctaatgaagatgatgaa
gaggatcccctggatgcgtacatggctggtctggagcagcaggctgccaaggacctggtg
gccagtaaggagaacgaggccagtggcaagggtgatagtggaagggggaccagaggagat
attgatgaaatggatgatgaggagagttattataaatatatggaagacaatccgttaaca
acagctgatgatggatcagatgtggaaattgaatatgacgaggatggaaacccaatacct
ccacccaaaaagaagttcatagatcccctgccacctatagaccattcagagataacatat
gaaccctttgagaagaacttttacacaccacatgaggaaattgagaagttgactgcacag
caggttgacgatttgaaaaagcatctaggtgtcaagatctcaggcccggatccacctcgt
cccgtgaccagcttcgctcacctcggcttcgacgagcagctgatgaaggcgatacgcaag
tcggagtacacgcagccgacgcccatacaggccgccggcgtgcccgccgctctttcgggg
agggatcttataggtatcgctcgcacggggtccggtaagaccgcggcgttcctttggccg
ctgctcgtgcacatcatggaccagaaggagctggcgcccggggatggacccattgggctc
attctcgcacccactcgggagcttgcacaacagatttatatggaagcaaagaggtttggc
aaagtttataacataaggtgcatctgcgcgtatggtggcggttcaaagtgggaacaaacg
aaggccttagaaggtggcggtgcagagatagtggtgggcacgccgggccgcatcatcgac
ctgatcaagagcaaggccacgaccctcaaccgggtcacctacctcgtgctggacgaagct
gatcgcatgttcgacatgggctttgagccgcaggtgcgttcgatctgcgcgcacgtgcgg
cccgagcggcaggcgctgctgttctcggcgacgttcccgcggcgcgtggagcggctggcg
cgcgacgcgctgcacgaccccgtgcgcgtgcagcacggcgccgcgggggaggcctcgcac
ctcgtctcgcagcacgtgagaatattcaacaagcctgatgaaaaatggtcatggctactc
aaaaacttggtggagttcctatcggcaggcagtatattgatatttgtgacgaaaaagctg
gaagcggagcagacggcagcgaacctgggcgtgcagcagtacgacgctctgctgttgcac
ggcgacatggaccaggcagaccgcaacaaggtcatcacggcgttcaagcggcacgagaac
agcatcctcgttgctactgacgtcgcagcccgaggcctggacattccgcacatccgcacg
gtgatcaactacacggtggcgcgcgacatcgacactcacacgcaccgcgtcggtcgtacc
ggacgagccggtgtacggggacacgcgtacaccctgctctcgcgcgacaccgaccgcgag
ttcgccggacacctgctgcggaacctggagggcgtgcagcaggaagtgccagaagagcta
atgcaactggcgatgcagtcctcatggttccgcaagtcgcgatttaagaagggcaaagga
aagaacttgaacatcggaggctgcggactcggatacaaggagcgtccggggctgccgccg
gcggtggaggagccggcggtggagcgcgcggcgggccccgccaccgaccgcctcgcctcg
ctcaagcaggccttccggactcagtataaccagttcacagcatccacggaccactcatgg
gagcagacccggccggccctgcagcccggggtcaacgccccggccgcgcccgcgcccgag
cgcacgcgccgcggcggcaagcgcagccgctgggagtag
DBGET
integrated database retrieval system
