Enterobacter roggenkampii 35734: LI67_003160
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Entry
LI67_003160 CDS
T04878
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ecls
Enterobacter roggenkampii 35734
Pathway
ecls03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecls00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LI67_003160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecls03019
]
LI67_003160
03016 Transfer RNA biogenesis [BR:
ecls03016
]
LI67_003160
Enzymes [BR:
ecls01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LI67_003160
Messenger RNA biogenesis [BR:
ecls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LI67_003160
Transfer RNA biogenesis [BR:
ecls03016
]
Prokaryotic type
tRNA degradation factors
LI67_003160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AKZ71750
LinkDB
All DBs
Position
1:472105..474546
Genome browser
AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGFGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPKA
VEEQIESLREEVPEESKVGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLESISDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDDRKI
DFSLISSERAPRNVGKTERERAKKGGNGKTSGKRRQAGKKVNFEPDSAFRGEKKQKPKAA
KKEARAAKKPSAKTQKIAAATKAKRAAKKKQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatcctttccaggaacgcgaagccgaaaaatacgcgaatcctatccccagc
cgcgagttcatcattgaacacttaacaaaacgcgaaaaacccgccaatcgtgaagaactt
gctgttgaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgc
gcgatggagcgtgacgggcagctggtctttacccgccgccagtgctacgcgctgccagaa
cgcctcgatctgctgaaagggaccgtcattggtcaccgcgatggcttcggcttcctgcgc
gtggaaggccgtaaagacgatctgtatctctcatctgaacagatgaaaatgtgcatccac
ggtgaccaaattctggcgcagccgctgggcgctgaccgtaaaggtcgccgagaagcgcgc
gtcgtgcgcgtcctggtgccaaaaaccagccagattgttggccgctactttaccgacgcg
ggcgtgggcttcgtggtgccggacgacagccgtctgagcttcgacattctgatcccacct
gaagaggtgatgggcgcccgcatgggctttgtggtggtggtggaactcacccagcgccca
acccgtcgcaccaaagcggtaggtaaaatcgtcgaagtgctgggcgataatatgggcacc
ggcatggccgttgatatggcgctgcgcacccacgaaattccatacatctggccgaaagcg
gttgaagagcagatcgaaagcctgcgtgaagaagtgccggaagaatccaaagtgggccgc
gtggatctccgctccctgccgctggttacgatcgatggtgaagacgcccgtgacttcgat
gacgccgtctactgcgagaaaaaacgcggcggcggctggcgtctgtgggtagcgattgca
gacgtaagctactacgttcgtccgcatactccgctggataacgaagcgcgcagccgcggt
acttcggtctacttcccgtcgcaggttgtaccgatgctgccggaagtgctgtctaacggc
ctgtgttccctgaacccgcaggttgaccgcctctgtatggtttgcgagatgaccatctcc
accaaagggcgcttaactggctataaattctacgaagcggtgatgagctcgcacgcgcgt
ctgacctacaccaaggtctggcatatgctgcagggcgaccaggatcttcgcgaacagtac
gcgccgctggtcaaacatatcgaagagctgcataacctctacaaaacgctggatcaggcg
cgcgaagagcgcggcgggatctcctttgagagcgaagaggcgaaatttatcttcaacgcc
gagcgtcgcattgagcgcatcgagcagactcagcgtaacgatgcgcacaagctgattgaa
gagtgtatgatcctggcgaacatctcggcggcacgcttcgttgagaaagccaaagagcct
gcgctgttccgtattcacgataaaccgtcgacggaagccatcaccgcgttccgctccgta
ctggccgagctcggtctggagctgccgggcggcaataagccagagccgcgcgattacgcc
gagctgctggaatccattagcgatcgtcctgatgcagaaatgctacaaaccatgctgctg
cgctcgatgaagcaggcgatttacgatccggaaaaccgcggtcacttcggcctggcgttg
cagtcttacgcccactttacgtcgccgatccgtcgttatcctgacctctctctgcaccgt
gcgatcaagtatctgctggcgcaggagcaaggccataaagggaacaccaccgaaaccggt
ggctaccactattcgatggaagagatgctgcagctgggtcagcactgctccatgaccgaa
cgccgtgccgatgaggccacccgcgacgtggcggactggctgaaatgtgactttatgctg
gaccaggtcggtaacgtcttcaaaggcgtgattgccagcgtgaccggctttggcttcttc
gtacgtctggacgagctgtttatcgacggtctggtgcacgtctccagcctggataacgac
tactaccgcttcgaccaggtcggccagcgcctgatcggcgaatctggcggccagacctac
cgcctgggcgaccgtgtggaagtgaaggttgaggccgtgaatatggacgaccgtaaaatc
gacttcagtctgatctccagcgagcgcgcgccgcgtaacgtcggtaaaaccgaacgtgaa
agggcgaaaaaaggcggaaacggcaaaacgagcggcaagcgccgtcaggccggtaagaag
gtgaacttcgagccggacagcgcgttccgcggcgagaagaagcagaagccgaaggcggca
aagaaagaagcccgtgccgcgaagaaaccttccgcgaagacacagaaaatagcggccgcc
accaaagcgaagcgcgcggctaagaaaaagcaggcggagtaa
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