Enterobacter roggenkampii 35734: LI67_015135
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Entry
LI67_015135 CDS
T04878
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecls
Enterobacter roggenkampii 35734
Brite
KEGG Orthology (KO) [BR:
ecls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecls03019
]
LI67_015135
Enzymes [BR:
ecls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LI67_015135
Messenger RNA biogenesis [BR:
ecls03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LI67_015135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
T2SSE
nSTAND3
NACHT
ResIII
AAA_16
SLFN-g3_helicase
ABC_tran
NTPase_1
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKZ74008
LinkDB
All DBs
Position
1:complement(3019558..3023460)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKFTFPMLLQQLDSLTLRDKQRFARRLHGVKKVKNPDAQQAIYQEMAKEIEQAAGK
VVLREAARPAITYPENLPVSQKKQDILETVRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSKH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGNESAGDILIFMSGE
REIRDTADALSKRDLRHTEILPLYARLSNSEQNRVFQPHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ATVYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRVDFLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREVHIALLTGLLSHIGMKDAEKQEYTGARNARFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWVEPVAQHLLKRSYSEPHWERAQGAVMATE
KVTVYGLPVVAARKVNYSQIDPALSRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDEALFEFYDQRISHDVISARHFDSWWKKASKETPDLLNFEKSMLIKEGA
ESVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALEREFRRMTGTTIDRDDW
NWDQVPDHLKITFRVVDDKNKKLLEGRSLSELKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPQEQQQMMWRGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIHEAGGPVWTEEGFAQLHEK
VRAELNDTVVEIAKQVEQILTTVFNINKRLKGRVDMTMALGLSDVKAQMAGLVYRGFVTG
NGFNRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESVQQAWQQWLNKLPPARRDDED
VQAIRWMIEELRVSFFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattcaccttcccgatgctcctgcaacagctcgattctctgacg
ctgcgcgacaaacagcgcttcgcccgccgtctgcacggcgtcaagaaggttaaaaatcct
gatgcacaacaggccatttaccaggagatggcgaaagagattgaacaggcggcagggaag
gttgtgctgcgcgaagctgcgcgcccggcgattacctacccggaaaacctgcccgtcagc
cagaagaaacaggacattcttgagaccgtacgcgaccaccaggtggtgattgtggcgggt
gaaaccggttcggggaaaactacccagctgccgaaaatctgtatggagctgggacgcggg
atcaaaggcctgattggccacacccagccgcgtcgtctggcggcgcgcaccgttgccaac
cgtattgccgaagagctgcagacggagccgggcggctgcatcggctacaaggtacggttc
agcgaccacgtgagcgataacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaattcagcaggatcgcctgctgatgcagtacgacaccatcatcatcgatgaggcgcac
gaacgtagcctgaacatcgacttcctgctcggctacctgaaagagctgctgccgcgtcgc
ccggatctgaaagttatcatcacctccgcgaccatcgacccggaacgcttctcgaagcat
ttcaacaatgcgccgattatcgaggtgtcaggccgcacatatccggttgaagtgcgctat
cgcccgattgtggaagaggcggacgataccgagcgcgaccagctgcaggccatcttcgac
gccgttgacgagctgggtaacgaaagcgcgggcgacatcctgatcttcatgagcggcgaa
cgcgaaatccgcgataccgccgacgcgctcagcaagcgcgacctgcgccacaccgagatc
ctgccgctgtatgcccgcctgtccaacagcgaacagaaccgcgtcttccagccgcacagc
ggacgccgcatcgtcctggcgaccaacgtggcggaaacctcgctgaccgtgccgggcatt
aaatacgtgatcgatccgggtacggcgcgcatcagccgctacagctaccgcaccaaggtc
cagcggctgccgattgagccggtctctcaggcatcggccaaccagcgtaaagggcgctgc
ggccgcgtgtcggaagggatctgcattcgtctctattccgaagacgatttcctgtcgcgc
ccggagttcaccgacccggaaattctgcgcaccaacctggcgtccgttatcctgcagatg
accgcgctggggctgggcgacatcgcggcgtttccgttcgtcgaagcgccggataagcgc
aacattcaggacggcgtgcgtctgctggaagagctcggggcgattaccaccgacgagcag
gcaacggtctataagctgacgccgctgggccgccagctcagccagctcccggtcgacccg
cgtctggcgcgcatggtgctggaagcgcaaaagcacggctgcgtgcgcgaggcgatgatc
attacctcggcgctctctattcaggatccgcgcgagcgtccgatggacaaacagcaggcc
tcggacgaaaagcaccgtcgcttccacgacaaagagtccgatttcctcgccttcgtgaac
ctgtggaactacctcggcgagcagcagaaggcgctctcttcgaaccagttccgccgtcag
tgccgggtggatttcctcaactacctgcgcgtgcgcgagtggcaggatatctatacccag
cttcgccaggtggtgaaagagctgggtattccggtcaacagcgaaccggcggagtaccgc
gaagtgcatatcgcgctgctgaccggcctgctgtcccacattgggatgaaggacgccgag
aagcaggagtataccggcgcgcgcaacgcccgttttgccatcttcccaggttctggcctg
ttcaagaagccgccgaagtggaccatggtcgcggagctggtggaaaccagccgcctgtgg
ggacgcattgccgcccgtatcgatccggaatgggtggagccggtggcgcagcatctgctt
aagcgctcgtacagtgaaccgcactgggagcgcgcgcagggcgcggtgatggcgaccgaa
aaagtgaccgtttacggcttgccggtggtcgccgcgcgcaaggtcaactacagccagatc
gatccggcgctcagccgcgagctgtttatccgtcacgcgctggtggagggagactggcag
acgcgccacgccttcttccgcgaaaacctgaagctgcgcgcggaagtggaggaacttgag
cacaagtcccgccgccgcgacattctggtggacgacgaggcgctgttcgagttttacgac
cagcgcatcagccacgatgtgatttccgcccgccacttcgacagctggtggaagaaggcc
agcaaagagacgccggacctgctcaacttcgaaaagagcatgctgataaaagagggcgcc
gagtcggtcagcaagctcgactacccgaacttctggcatcagggcaacctcaagctgcgg
ctgacctatcagttcgagccgggggcagacgcggacggcgtgaccgtccacattccgctg
ccgctgttaaaccaggtggacgagagcggtttcgagtggcaaattcccggcctgcgccgc
gagctggtgattgcgctgatcaaatctctgccgaaaccggtgcgccgcaactttgtgcct
gcgccaaactacgcggaagcgtttttgggccgcgtcacgccgctggagctgccgctgctg
gacgcgctggagcgcgagttccgccgcatgaccggcaccaccatcgaccgcgacgactgg
aactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggacgataaaaac
aaaaagctgctggaagggcgttccctgagcgagctgaaagaggcgctgaaaggcaaagtc
caggagacgctctctgcggtggccgacgacggcatcgagcagagcgggctgcatatctgg
agctttggccagcttccggaaagctacgagcagaagcgcggcaactataaggtgaaagcc
tggccggcgctggtggacgagcgcgacagcgtggcgatcaaactgtttgataacccgcag
gaacagcagcagatgatgtggcgcgggctgcgtcgcctgctgctgctcaacatcccgtcg
ccgatcaagtatctgcacgagaagctgcctaacaaggccaagctgggtctctactttaac
ccgtacggcaaagtgctggatctgattgacgactgcatctcctgcggcgtggacaaactc
attcacgaggcgggtggcccggtctggacggaagagggctttgctcagctgcatgaaaag
gtgcgcgcggagctgaacgacaccgtggtggagattgccaaacaggtcgagcagatcctc
accaccgtgttcaacatcaacaagcgtctgaaagggcgcgtggatatgaccatggcgctg
ggcctgtcggacgtgaaggcgcagatggcggggctggtttaccgcggctttgtcaccggc
aacggcttcaaccgtctcggcgatacgctgcgctatttgcaggcgattgaaaaacggctg
gagaaaatggctatcgatccgcaccgcgaccgcgcgcagatgctgaaagtggagagcgtg
cagcaggcgtggcagcagtggctgaacaagctgccgccagcgcgccgcgacgatgaagac
gtgcaggcgatccgctggatgatcgaggagctgcgcgtcagcttctttgcccagcagctc
ggtacgccgtatccgatttcggataagcgtattctgcaggcgatggagcagatttcaggt
taa
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