Enterobacter hormaechei subsp. steigerwaltii: LI62_21410
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Entry
LI62_21410 CDS
T03708
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ecly
Enterobacter hormaechei subsp. steigerwaltii
Pathway
ecly02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ecly00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LI62_21410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecly03021
]
LI62_21410
Transcription machinery [BR:
ecly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LI62_21410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AJB64478
LinkDB
All DBs
Position
4153895..4155739
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETSNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDMAPTA
THVGSELSQEEMDDDEDEDEEEEDDSSDDDNSIDPELAREKFAELRTQYEVTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVKEDVQRGLQKLHQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaaacttcttgtccaacgcggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
atcgaagatatcatccaaatgatcaatgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatctgttgctggctgaaacctccaacaacactgacgaagatgcggaagaa
gctgctgcacaggtcctgtccagcgtggaatctgaaatcgggcgtaccactgacccggtc
cgcatgtacatgcgcgaaatgggtaccgttgaactgttgacccgcgaaggcgaaattgac
atcgcaaaacgcatcgaagacgggatcaaccaggttcagtgctctgttgccgaatacccg
gaagcgattacctatcttctggagcagtacgatcgcgttgaagcggaagaagcgcgtctg
tccgatctgatcactggctttgtcgacccgaacgctgaagaagatatggcgccaaccgcc
actcacgtcggttctgagctgtctcaggaagagatggatgacgacgaagacgaagatgaa
gaagaagaggacgacagcagcgacgatgacaacagcatcgaccctgaactggcgcgtgag
aagtttgccgagctgcgtacccagtacgaagtgacgcgtgacaccatcaaagcgaaaggc
cgcagccatgccgccgctcaggaagagatcctgaagctgtctgaagtgttcaaacagttc
cgcctggtgccaaaacagttcgactacctggtgaacagcatgcgcgtgatgatggatcgc
gtacgtacccaggaacgtatcatcatgaagctgtgcgttgaacagtgcaaaatgcctaag
aagaacttcattaccctcttcaccggcaatgaaaccagcgaaacctggttcaacgccgct
atcgcgatgaacaagccgtggtctgaaaagctgcacgacgtgaaagaagacgtacagcgc
ggcctgcaaaaactgcatcagattgaagaagagaccggcctgaccatcgagcaggtgaaa
gacatcaaccgtcgtatgtccatcggtgaagcgaaagcccgccgtgcgaagaaagagatg
gttgaagcgaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggcctg
caattcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataagttt
gaataccgtcgtggttacaagttctccacctatgctacctggtggatccgtcaggcgatc
acccgctctatcgcagaccaggcgcgcaccatccgtattccggtgcatatgattgagacc
atcaacaaactcaaccgtatctctcgccagatgttgcaggagatgggccgcgagccgacg
ccggaagagctggctgaacgcatgctgatgccggaagacaagatccgtaaagtgctgaaa
atcgctaaagagccaatctccatggaaacgccaatcggtgatgatgaagattcgcatctg
ggtgatttcatcgaggataccaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgtgccgctacgcacgacgtgctggctggcctgaccgcccgtgaagccaaagtgctg
cgtatgcgtttcggtatcgacatgaacaccgaccacacgctggaagaagtgggtaaacag
tttgacgttacccgcgaacgtattcgtcagatcgaagcgaaggcgctgcgtaagctgcgc
catccgagccgctctgaagtgctgcgtagcttcctggacgattaa
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