Enterobacter hormaechei subsp. hormaechei: LI64_08560
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Entry
LI64_08560 CDS
T03709
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eclz
Enterobacter hormaechei subsp. hormaechei
Pathway
eclz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eclz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LI64_08560 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eclz03019
]
LI64_08560 (rne)
03009 Ribosome biogenesis [BR:
eclz03009
]
LI64_08560 (rne)
Enzymes [BR:
eclz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LI64_08560 (rne)
Messenger RNA biogenesis [BR:
eclz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LI64_08560 (rne)
Ribosome biogenesis [BR:
eclz03009
]
Prokaryotic type
rRNA processing factors
LI64_08560 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AJB70591
LinkDB
All DBs
Position
complement(1774770..1777886)
Genome browser
AA seq
1038 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIEARQGGVRCIIVPNDEMQ
TPHYHVLRVRKGEETSTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
ATLEKPAAKPAVQKAAPAAPTAQPEQPGLLSRIFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRNDRSDRNERRDNRSENNEGREQREDNRRNRREKQQQNVEDR
DIRQQAGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNREAPVEQQDTEQEERT
QVMPRRKQRQLTQKVRVGAVQAEENDVIAVEAAESTTGTQVAKVDLPAVVENQVEQDESS
ENRDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRY
PVARPEQAVEEQAVTEEVIAPVAAVEEVVTEAATVVEPQVVETAAPQAVEVETTHPEVIA
APVDAAPQIIAEEDTVVAEEVAEEAEPVSVAEETADVAVETVTEEVVQDVEIQVEPVVEE
VKAPEVKSEPVEAVAAPAPAHVATAPMTRAPAPEYVPEAPRHSDWVRPDFNFEGKGAAGG
HSATHMATAPATRPQPVE
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaacaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggcaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttccttcctctcaaagaaattgcccgcgaatatttccctgcc
aactacaactcccatggccgtccgaacatcaaagatgttctgcgtgaaggtcaggaagtt
atcgttcagatcgataaagaagagcgcggcaacaaaggtgctgcactgaccacctttatc
agtctggcaggcagctatctggtattgatgccaaacaacccgcgtgcgggtggcatctct
cgccgtatcgaaggcgatgaccgcaccgagctgaaagaagcgctggcaagtcttgagctg
ccagacggcatgggccttatcgtgcgcaccgcaggcgtcggcaaatctgccgaagcgttg
cagtgggacctgagcttccgcctgaagcactgggaagccattaagaaagcggctgaaagc
cgtcctgctccgttcctgatccaccaggaaagtaacgttattgtgcgtgctttccgtgat
tatctgcgtcaggacatcggtgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgcccggatttcaccagcaaaattaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagatcgagtctgccttccag
cgtgaagtgcgtctgccgtccggcggttctatcgttatcgataccaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggcgacatcgaagagaccgccttc
aacaccaaccttgaagccgcagatgaaatcgcccgccagctccgcctgcgcgacctgggc
ggtctgatcgttatcgacttcatcgacatgaccccggttcgccaccagcgtgcggttgaa
aaccgtctgcgtgaagcggtacgccaggatcgtgcgcgtatccagattagccatatctcg
cgcttcggcctgctggaaatgtcccgtcagcgcctcagcccgtcactcggcgagtccagc
catcatgtttgcccgcgctgttccggtacgggtaccgtgcgtgacaatgaatctctctcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaggttcac
gccattgttccggtgccgattgcctcttacctgctgaacgaaaaacgtgcagcggtgagc
gcaatcgaagcgcgtcagggtggcgttcgctgcatcatcgtgccaaacgacgagatgcaa
accccgcactatcacgtactgcgcgtgcgtaaaggcgaagagacaagcaccctcagctac
ctgctgccgaagctgcatgaagaagaaatggcgctgccatctgatgaagagcctgccgag
cgtaaactgcctgagcagccagcattagcaaccttcatcatgccggaagcaccgccggaa
gcgacgctggaaaaaccagcggcaaaacctgctgtacaaaaagcggcgcctgccgcgcca
acagcgcagcctgagcaaccgggtctcctgagccgcatcttcggtgcgctgaaaaaaatg
tttgctggcgaagaagtacagcctgagcagccgaaagaagcaccaaaagaagcgaagcca
gagcgtcagcaggaccgtcgtaagcgtcagaacaatcgtcgcgatcgcaatgaccgcaac
gaccgtagcgatcgtaacgagcgccgtgataatcgttccgagaacaacgaaggtcgtgaa
caacgcgaggacaaccgtcgcaaccgtcgcgagaagcaacagcagaacgttgaagatcgt
gacattcgccagcaggcgggcgatgagtccgagaagagcaaacagcgtgacgagcagcag
cctcgccgcgagcgtaaccgtcgtcgtaacgacgagaaacgccaggcccagcaggaagtc
aaaaacctgaaccgcgaagcgcctgtagaacagcaggacacggagcaggaagagcgtact
caggttatgccgcgtcgtaagcagcgtcagttgacccagaaagtacgtgtgggtgctgtt
caggcggaagaaaacgacgttatcgcggttgaagcggcagaaagcacaacgggtacacag
gttgcgaaagttgacctgccagccgtagtggaaaatcaggttgagcaggacgaaagcagc
gaaaaccgtgataacgcgggtatgccgcgtcgctcccgccgttctccacgtcatctgcgc
gtgagcggtcagcgtcgtcgtcgttaccgtgacgaacgttacccgactcaatctccaatg
ccactgaccgtggcgtgcgcgtcacctgaaatggcatccggtaaagtctggatccgttat
ccggttgctcgcccggagcaggctgttgaagaacaggctgtgaccgaagaggtgattgca
ccggtagcggcggtggaagaggtcgtgactgaagcggcaaccgtggttgaaccgcaggta
gttgaaacggcggcaccgcaggccgtggaagtggaaacgacccatcctgaagtgattgct
gcgccggtcgatgccgccccgcagatcatcgccgaagaagataccgtggtggctgaagaa
gtcgcggaagaagctgagccggtctccgtagcagaagaaaccgcagacgttgccgttgaa
acggtgacggaagaggttgttcaggacgttgagattcaggttgaacctgttgttgaagag
gtcaaagcgcctgaagtgaaatccgagccagttgaggccgttgccgcgccagcgcctgct
cacgttgctaccgcgccaatgactcgcgccccggcacctgagtatgttcctgaagcgccg
cgccatagcgactgggttcgtccggacttcaacttcgaaggtaaaggtgctgccggtggt
cacagtgcgacgcacatggctactgcccctgctacccgtcctcagcctgttgaataa
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