Escherichia coli SMS-3-5 (environmental): EcSMS35_1759
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Entry
EcSMS35_1759 CDS
T00672
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecm03019
]
EcSMS35_1759 (hrpA)
Enzymes [BR:
ecm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EcSMS35_1759 (hrpA)
Messenger RNA biogenesis [BR:
ecm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EcSMS35_1759 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
APHB_HrpA
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
NTPase_1
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACB20069
UniProt:
B1LG65
LinkDB
All DBs
Position
complement(1763965..1767867)
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AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGK
VLLREAVRPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRIRHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttacggccttgcagcaacggttggattcgctgatg
ctgcgtgacagactgcgtttttcccgccgtctgcacggcgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcagggaaa
gtcctgctgcgtgaagcagtacgaccggaaatcacttatccagacaatttgccggttagt
cagaaaaagcaggacattctcgaagcaatccgtgatcaccaggtggtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggaactgggccgcggg
attaaagggctgatcggccatacccagccgcgtcgtctggcggcacgaacggtggcgaac
cgtattgcggaagagctgaaaacggagccgggcggttgcatcgggtataaagtgcgtttc
agcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacactatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacttaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgatcgttgaagaagctgatgacaccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggtgag
cgggaaattcgcgataccgccgatgcgctgaacaagctaaatctgcggcataccgaaatc
ttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcacagt
ggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggtatt
aaatacgttatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagcccatttcgcaggcttcagctaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcgcgc
ccggaatttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
actgcgctggggctgggcgatatcgctgcgttcccgtttgttgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaacag
gccagcgcctataaactgacgccgctcggtcgccagctttcgcaattgcctgtcgatcct
cgtctggcgcgtatggtgctggaagcgcagaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcaggca
tcggacgaaaaacatcgtcgcttccacgacaaagaatccgacttcctcgcgtttgtaaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgtcaggtagtgaaagaacttggcattccggttaacagcgaaccggcggagtatcgc
gaaattcacatcgccttactgaccggtttgctttcccatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccattttccccggttccggctta
tttaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcgtatcgacccggaatgggtagaacccgttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgctgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgctctggtggaaggtgactggcag
acgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctacgac
cagcgcatccgccacgatgtaatctccgctcgtcacttcgatagctggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattatccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagcccggcgcggatgctgacggtgtgactgtgcatatcccgctg
ccgctgcttaatcaggtagaagagagcgggtttgaatggcaaatccccggcctgcgccgc
gaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgtacct
gcgccaaactatgccgaagcgtttttaggccgcgtcaaaccgctggagttaccgttgctc
gacagtcttgagcgcgagttacggcggatgaccggtgttaccgttgaccgcgaagactgg
cactgggatcaggtgcctgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcattacaggatctgaaagatgcgctgaaaggcaaagtg
caggaaacgctgtctgcggtggcggatgacggtatcgagcagagcggcttacatatctgg
agttttggtcagctgccggaaagctacgaacagaagcgtggcaactataaagtgaaggcg
tggccagcgctggtggatgaacgcgacagtgtggcaatcaaattgtttgataatccgctg
gaacaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattccatcg
ccgatcaaatatttgcatgaaaagttaccgaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggggtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtccgtgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctc
actgcggtgttcaatatcaataaacgtctgaaagggcgggtggatatgactatggcgctg
gggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcactggt
aacggcttcaaacggttgggcgacacgctgcgttatttgcaggcgattgaaaaacgactg
gaaaaactggcggttgatccgcatcgtgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaagac
gtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaactt
ggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagcggt
taa
DBGET
integrated database retrieval system
