Escherichia coli SMS-3-5 (environmental): EcSMS35_2966
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Entry
EcSMS35_2966 CDS
T00672
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Pathway
ecm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EcSMS35_2966 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecm03400
]
EcSMS35_2966 (recD)
Enzymes [BR:
ecm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EcSMS35_2966 (recD)
DNA repair and recombination proteins [BR:
ecm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EcSMS35_2966 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
NAT10_TcmA_helicase
UvrD_C_2
Viral_helicase1
SH3_13
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
nSTAND3
MukB
PhoH
AAA_28
DEAD
UvrD_C
CbiA
FtsK_SpoIIIE
T2SSE
Bcl-2
SRP54
TrwB_AAD_bind
NTPase_1
AAA
NPHP3_N
ATPase
Motif
Other DBs
NCBI-ProteinID:
ACB19425
UniProt:
B1LR16
LinkDB
All DBs
Position
complement(3039266..3041092)
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AA seq
608 aa
AA seq
DB search
MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN
NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA
RFFNEVNHAIEVDEALLAQTLDKLFPVSDDINWQKVAAAVALTRRISVISGGPGTGKTTT
VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ
LASVEAGAVLGDICAYANAGFTAERAGQLSRLTGTHIPSGTGTEAASLRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKMAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALSGYGRYLD
LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGR
PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL
AALFSSRG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgcaaaagcaattactggaagctgtggagcacaaacagctacgcccgctggac
gtgcagtttgccctgaccgtggcgggagatgaacatcctgccgtcaccctcgcggcggca
ctgttaagtcatgatgccggagagggacacgtttgtttgccgctttcacgactggaaaat
aacgaggcatcgcatccgctgttggcgacctgtgtcagtgaaatcggtgagctacaaaat
tgggaagaatgcttgctggcttcacaagcggtcagccggggagatgaaccaacgccgatg
atcctctgtggcgatcgtctttatttgaatcgcatgtggtgtaacgagcgcacagtggca
cgctttttcaacgaagtgaatcatgccattgaggttgatgaagctctactggcgcaaacc
ctggacaaactttttccagtaagcgatgacattaactggcaaaaagtggcggcggcagtg
gcgctgacgcggcggatttcggtgatttccggcggtcctggcaccggtaaaacgaccacc
gtagcgaagttgctggcagccttaattcaaatggccgacggagaacgctgccgtatccgt
ctggctgcaccaacgggtaaagctgccgcgcgcttaaccgaatctctcggcaaggctttg
cgccagttaccgctgaccgatgaacaaaagaaacgcattccggaagatgccagtactttg
caccgattgctgggcgcacagccgggtagccagcgtttacgtcatcatgccggtaacccg
ctgcatcttgatgtgctggtagtagatgaagcgtcaatgatcgatctgccgatgatgtcg
agactgatagacgccttgcccgatcatgcgcgagtgatctttctcggcgatcgtgatcaa
ctggcctcggttgaggctggggctgtgctgggcgatatttgtgcttatgccaatgccggc
tttaccgccgagcgtgccgggcagctaagccgcctgacgggaactcacattccgtcagga
actggcacagaagcggcatctttgcgcgacagtctctgcctgctgcaaaaaagctatcgt
ttcggcagcgattctggcattggtcagttagctgcggcgattaaccgtggtgataaaatg
gcagtgaaaaccgtttttcagcaggattttactgatatcgaaaaacggcttttacagagc
ggcgaagattatattgcgatgcttgaggaagctctttcgggttacggacgttatctggat
ctgctgcaagcgcgtgccgagccggatttaatcattcaggcgttcaatgagtaccagctt
ttgtgcgccctgcgggaagggccgtttggcgtggctggactgaatgagcgaattgagcag
tttatgcaacagaagcgcaaaattcatcgtaatccgcactctcgttggtacgaaggccga
ccggtgatgattgcccgtaatgacagcgcgcttgggttgtttaatggcgatatcggtatt
gcgctggatcgcgggcaggggacgcgcgtctggtttgcgatgccggacggcaatattaag
tctgtgcaaccgagtcgcttgccagagcacgaaacgacgtgggcgatgacggtacataaa
tcgcagggatcggagttcgaccatgcggcgttgattttaccgagccaacgcacgccagta
gtaacacgagagctggtttacactgcggtgacccgcgcgcgtcgccgtctgtcgctgtat
gccgatgagcgcattttaagtgcggcaattgccacgcgcaccgagcggcgcagcggtctg
gcggcgttgtttagttcacggggataa
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integrated database retrieval system
