Escherichia coli SMS-3-5 (environmental): EcSMS35_3025
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Entry
EcSMS35_3025 CDS
T00672
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Pathway
ecm03410
Base excision repair
ecm03430
Mismatch repair
ecm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EcSMS35_3025 (recJ)
03430 Mismatch repair
EcSMS35_3025 (recJ)
03440 Homologous recombination
EcSMS35_3025 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecm03400
]
EcSMS35_3025 (recJ)
DNA repair and recombination proteins [BR:
ecm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EcSMS35_3025 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EcSMS35_3025 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EcSMS35_3025 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
ACB19285
UniProt:
B1LR74
LinkDB
All DBs
Position
complement(3115173..3116906)
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AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAHELERSVKGMLPWQQLSGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLR
DCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPL
DANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDMLYP
GMMLKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTME
VAQLLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTA
LWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcgccgtgaagtcgatgaaacggcagacttgcccgcg
gaattgcctcccttgctgcgccgtttatacgccagccggggagtacgcagtgcgcatgaa
ctggaacgcagtgttaaaggtatgctgccctggcagcaactgagcggcgtcgaaaaggcc
gttgagatcctttacaacgcttttcgcgaaggaacgcggattattgtggtcggtgatttc
gacgccgacggcgcgaccagcacggctctaagcgtgctggcgatgcgctcgcttggttgc
agcaatatcgactacctggtaccaaaccgtttcgaagacggttacggcttaagcccggaa
gtagtcgatcaggcccatgcccgtggcgcgcagttaattgtcacggtggataacggtatt
tcctcccatgcgggggttgaacacgctcgttcgttgggcattccggttattgttaccgat
caccatttgccgggcgacacattacccgcagcggaagcgatcattaaccctaacttgcgc
gactgtaatttcccgtcgaaatcactggcaggcgtgggtgtggcgttttatctgatgctg
gctctgcgcacctttttgcgcgatcagggctggtttgatgagcgcggcatcgcaattcct
aatctggcagaactgctggatctggtggcgttggggacagtggcagacgtggtgccgctg
gacgctaataaccgtattctgacctggcaggggatgagccgcatccgcgccgggaagtgc
cgtccggggattaaagcgctgctggaagtggccaatcgcgatgcgcaaaaactcgccgcc
agcgatttaggttttgcgctggggccgcgtctcaatgccgccgggcgactggatgatatg
tccgttggtgtggcgctgttgctgtgcgacaacatcggcgaagcgcgcgtgctggcaaat
gaactcgatgcgctaaaccagacgcgaaaagagatcgaacagggaatgcagattgaagcc
ctgaccctgtgcgagaaactggagcgcagccgcgacacgctacccggtgggctggcaatg
tatcaccccgaatggcatcagggcgtggtcggcattctggcttcgcgcatcaaagagcgt
tttcatcgtccggttatcgcctttgcgccagcaggtgatggtacgctgaaaggttccggt
cgctccattcaggggctgcatatgcgtgatgcgctggagcggttagacatgctctaccct
ggcatgatgctcaagtttggcggtcatgcgatggcggctggtttgtcgctggaagaggat
aaattcgaactctttcaacaacggtttggcgaactggttactgagtggctggatccttca
ctattgcaaggcgaagtggtgtcagacggcccgttaagcccggccgaaatgaccatggaa
gtagcgcagctgctgcgcgatgctggcccgtgggggcagatgttcccggagccgctgttt
gacggtcatttccgccttctgcaacaacgactggtaggcgaacgccatttgaaggtcatg
gttgaaccggtcggcggcggcccgctgctggacggcattgcctttaacgttgataccgcc
ctttggccggataacggcgtgcgcgaagtgcaactggcttataagcttgatatcaacgag
tttcgcggcaatcgcagcctgcaaattatcatcgacaatatctggccaatttag
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