Escherichia coli SMS-3-5 (environmental): EcSMS35_A0072
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Entry
EcSMS35_A0072 CDS
T00672
Symbol
sopB
Name
(GenBank) plasmid partition protein SopB
KO
K03497
ParB family transcriptional regulator, chromosome partitioning protein
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:
ecm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecm03000
]
EcSMS35_A0072 (sopB)
03036 Chromosome and associated proteins [BR:
ecm03036
]
EcSMS35_A0072 (sopB)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ecm04812
]
EcSMS35_A0072 (sopB)
Transcription factors [BR:
ecm03000
]
Prokaryotic type
Other transcription factors
Others
EcSMS35_A0072 (sopB)
Chromosome and associated proteins [BR:
ecm03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
EcSMS35_A0072 (sopB)
Cytoskeleton proteins [BR:
ecm04812
]
Prokaryotic cytoskeleton proteins
MinD / ParA class of bacterial cytoskeletal proteins
EcSMS35_A0072 (sopB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SoPB_HTH
ParBc
Caudo_TAP
Motif
Other DBs
NCBI-ProteinID:
ACB20243
UniProt:
B1LRQ3
LinkDB
All DBs
Position
pSMS35_130:complement(53664..54635)
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AA seq
323 aa
AA seq
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MKRAPVIPKHTIKTQPLEDTPSSAPAAPMVDSLIARVGAMARGNAITLPVCGRDVKFTLE
VLRGDSVEKTSRVWSGNERDQELLTEDALDDLIPSFLLTGQQTPAFGRRVSGVIEIADGS
RRRKAAALTESDYRVLVGELDDEQMAALSRLGNDYRPTSAYERGQRYASRLQNEFAGNIS
ALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQRAFTDKEELLKQQAS
NLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLSSRHQFAPGATVLYKGDKMVLNLDR
SRIPTECIERIEAILKELEKAAL
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtgcgcctgtcattccaaaacatacgattaagactcaaccgcttgaagatact
ccgtcatcggcaccagctgcaccgatggtggattcgttaattgcgcgcgtaggagctatg
gctcgtggcaatgctattactttgcctgtatgtggtagggacgtgaaatttacccttgag
gtgctccggggagatagtgttgagaagacctctcgggtatggtcaggtaatgaacgtgac
caggaactgcttaccgaagacgccctggatgatcttatcccttcttttctactgacaggt
cagcagacaccagcattcggtcgaagagtgtctggggtcatagaaattgccgatgggagc
cgccgtcgtaaagctgctgcacttacagaaagtgattatcgagttctggttggtgagctg
gatgatgagcagatggctgcattgtccagattgggtaacgattataggccaacaagtgct
tatgaacgtggtcagcgttatgcaagccgattgcagaatgaatttgctggaaatatttct
gcgctggctgatgcagaaaatatttcacgtaagattattacccgctgtatcaacacagct
aaactgcctaaatcagttgttgctcttttttctcatcccggtgaactatctgcccggtca
ggtgatgcacttcaaagagcttttacagataaagaagaattacttaagcagcaggcatct
aaccttcacgagcagaaaaaagcaggagtgatatttgaagctgaagaagtcatcactctt
ttaacgtctgtgcttaaaacgtcatctgcctcaagaactagcttaagctcacgacatcag
tttgctcctggagcgacagtgttgtacaagggcgataaaatggtgttaaacctagataga
tctcgtattccaactgagtgtatagagagaattgaagccattcttaaggaacttgaaaaa
gcggcactttga
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