Escherichia coli K-12 MG1655: b1084
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Entry
b1084 CDS
T00007
Symbol
rne
Name
(RefSeq) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eco
Escherichia coli K-12 MG1655
Pathway
eco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
b1084 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eco03019
]
b1084 (rne)
03009 Ribosome biogenesis [BR:
eco03009
]
b1084 (rne)
Enzymes [BR:
eco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
b1084 (rne)
Messenger RNA biogenesis [BR:
eco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
b1084 (rne)
Ribosome biogenesis [BR:
eco03009
]
Prokaryotic type
rRNA processing factors
b1084 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-GeneID:
945641
NCBI-ProteinID:
NP_415602
Pasteur:
rne
RegulonDB:
RDBECOLIGNC00849
ECOCYC:
EG10859
ASAP:
ABE-0003668
UniProt:
P21513
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(1141182..1144367)
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME
TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA
PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA
KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA
EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR
KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ
QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG
KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV
QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV
VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP
EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgcgttgcccttgtagat
gggcagcgtctgtatgacctggatatcgaaagtccagggcacgagcagaaaaaggcaaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttcctcccactaaaagaaattgcccgcgaatatttccctgct
aactacagtgctcatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcattaaccacctttatc
agtctggcgggtagctatctggttctgatgccgaacaacccgcgcgcgggtggcatttct
cgccgtatcgaaggcgacgaccgtaccgaattaaaagaagcactggcaagccttgaactg
ccggaaggcatggggcttatcgtgcgcaccgctggcgtcggcaaatctgctgaggcgctg
caatgggatttaagcttccgtctgaaacactgggaagccatcaaaaaagccgctgaaagc
cgcccggccccgttcctgattcatcaggagagcaacgtaatcgttcgcgcattccgcgat
tacttacgtcaggacatcggcgaaatccttatcgataacccgaaagtgctcgaactggca
cgtcagcatatcgctgcattaggtcgcccggatttcagcagcaaaatcaaactgtacacc
ggcgagatcccgctgttcagccactaccagatcgagtcacagatcgagtccgccttccag
cgtgaagttcgtctgccgtctggtggttccattgttatcgacagcaccgaagcgttaacg
gccatcgacatcaactccgcacgcgcgacccgcggcggcgatatcgaagaaaccgcgttt
aacactaacctcgaagctgccgatgagattgctcgtcagctgcgcctgcgtgacctcggc
ggcctgattgttatcgacttcatcgacatgacgccagtacgccaccagcgtgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgtgcgcgtattcaaatcagccatatttct
cgctttggcctgctggaaatgtcccgtcagcgcctgagcccatcactgggtgaatccagt
catcacgtttgtccgcgttgttctggtactggcaccgtgcgtgacaacgaatcgctgtcg
ctctctattctgcgtctgatcgaagaagaagcgctgaaagagaacacccaggaagttcac
gccattgttcctgtgccaatcgcttcttacctgctgaatgaaaaacgttctgcggtaaat
gccattgaaactcgtcaggacggtgtgcgctgtgtaattgtgccaaacgatcagatggaa
accccgcactaccacgtgctgcgcgtgcgtaaaggggaagaaaccccaaccttaagctac
atgctgccgaagctgcatgaagaagcgatggcgctgccgtctgaagaagagttcgctgaa
cgtaagcgtccggaacaacctgcgctggcaacctttgccatgccggatgtgccgcctgcg
ccaacgccagctgaacctgccgcgcctgttgtagctccagcaccgaaagctgcaccggca
acaccagcagctcctgcacaacctgggctgttgagccgcttcttcggcgcactgaaagcg
ctgttcagcggtggtgaagaaaccaaaccgaccgagcaaccagcaccgaaagcagaagcg
aaaccggaacgtcaacaggatcgtcgcaagcctcgtcagaacaaccgccgtgaccgtaat
gagcgccgcgacacccgtagtgaacgtactgaaggcagcgataatcgcgaagaaaaccgt
cgtaatcgtcgccaggcacagcagcagactgccgagacgcgtgagagccgtcagcaggct
gaggtaacggaaaaagcgcgtaccgccgacgagcagcaagcgccgcgtcgtgaacgtagc
cgccgccgtaatgatgataaacgtcaggcgcaacaagaagcgaaggcgctgaatgttgaa
gagcaatctgttcaggaaaccgaacaggaagaacgtgtacgtccggttcagccgcgtcgt
aaacagcgtcagctcaatcagaaagtgcgttacgagcaaagcgtagccgaagaagcggta
gtcgcaccggtggttgaagaaactgtcgctgccgaaccaattgttcaggaagcgccagct
ccacgcacagaactggtgaaagtcccgctgccagtcgtagcgcaaactgcaccagaacag
caagaagagaacaatgctgataaccgtgacaacggtggcatgccgcgtcgttctcgccgc
tcgcctcgtcacctgcgcgtaagtggtcagcgtcgtcgtcgctatcgtgacgagcgttat
ccaacccagtcgccaatgccgttgaccgtagcgtgcgcgtctccggaactggcctctggc
aaagtctggatccgctatccaattgtacgtccgcaagatgtacaggttgaagagcagcgc
gaacaggaagaagtacatgtgcagccgatggtgactgaggtccctgtcgccgccgctatc
gaaccggttgttagcgcgccagttgttgaagaagtggccggtgtcgtagaagcccccgtt
caggttgccgaaccgcaaccggaagtggttgaaacgacgcatcctgaagtgatcgctgcc
gcggtaactgaacagccgcaggtgattaccgagtctgatgttgccgtagcccaggaagtt
gcagaacaagcagaaccggtggttgaaccgcaggaagagacggcagatattgaagaagtt
gtcgaaactgctgaggttgtagttgctgaacctgaagttgttgctcaacctgccgcgcca
gtagtcgctgaagtcgcagcagaagttgaaacggtagctgcggtcgaacctgaggtcacc
gttgagcataaccacgctaccgcgccaatgacgcgcgctccagcaccggaatatgttccg
gaggcaccgcgtcacagtgactggcagcgccctacttttgccttcgaaggtaaaggtgcc
gcaggtggtcatacggcaacacatcatgcctctgccgctcctgcgcgtccgcaacctgtt
gagtaa
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