Escherichia coli K-12 MG1655: b1804
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Entry
b1804 CDS
T00007
Symbol
rnd
Name
(RefSeq) RNase D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
eco
Escherichia coli K-12 MG1655
Brite
KEGG Orthology (KO) [BR:
eco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eco03016
]
b1804 (rnd)
Enzymes [BR:
eco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
b1804 (rnd)
Transfer RNA biogenesis [BR:
eco03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
b1804 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-GeneID:
946328
NCBI-ProteinID:
NP_416318
Pasteur:
rnd
RegulonDB:
RDBECOLIGNC00848
ECOCYC:
EG10858
ASAP:
ABE-0006003
UniProt:
P09155
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(1886864..1887991)
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AA seq
375 aa
AA seq
DB search
MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGI
TDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFAS
MVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAAL
DECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDM
PGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGE
LMAEALHNLLQEYPQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgattaccacggacgatgcgctggcttctttgtgtgaagccgtccgt
gcctttccggcgatagccctggatactgaatttgttcgtacgcgcacttattacccgcag
ctggggttgattcaacttttcgatggcgagcatctggcgctaatcgatccactcgggatc
accgactggtcaccgctgaaagcgatcctgcgcgatccgtccatcacaaaatttctccat
gcaggcagtgaagatctggaagtgttcctcaatgtctttggcgaattaccacaacccttg
attgacacgcaaatccttgctgccttctgcggacgcccgatgtcatggggtttcgcttcc
atggtggaagagtattccggcgttacgctggacaagagtgaatcgcgcaccgactggctg
gccagaccgctgaccgaacgtcagtgtgaatacgcagcggcggatgtctggtatctgtta
ccgatcaccgccaagcttatggtagaaacggaggcctccggctggctacctgcggcgctg
gatgaatgccgcctgatgcaaatgcgtcgtcaggaagtcgttgcgccggaagatgcctgg
cgtgatatcaccaatgcctggcaattacgcacacgccaactggcctgtctgcaactgtta
gccgactggcgactgcgcaaggcgcgagagcgcgatctggcggtgaactttgtcgtgcgt
gaagagcatttgtggtcggtagcgcgttatatgccgggaagtttaggcgaactggacagc
ctgggtttatccggtagcgaaatccgctttcacggtaaaacgctgctagcgctggtggaa
aaagcgcagacattgccggaagatgccttaccgcagccgatgcttaacctgatggacatg
ccgggttatcgtaaagcgtttaaagcgattaagtcgctgattactgacgtgagcgaaacg
cataagatcagcgccgaattgctggcatcgcgtcggcaaatcaaccaactgctgaactgg
cactggaaactgaaaccgcagaacaatttgccggagctgatttccggctggcgtggtgag
ctgatggcggaagcattacacaatttattgcaggaatatccgcagtaa
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