Escherichia coli APEC O78 (APEC): APECO78_05490
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Entry
APECO78_05490 CDS
T02445
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecoa03400
]
APECO78_05490
DNA repair and recombination proteins [BR:
ecoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
APECO78_05490
Archaeal homologous recombinant proteins
APECO78_05490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
cobW
AAA_15
nSTAND3
RsgA_GTPase
NTPase_1
AAA_14
AAA_22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AGC85833
LinkDB
All DBs
Position
complement(1124360..1127503)
Genome browser
AA seq
1047 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCA
DGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQ
QEQQSLNWLTRQDELQQEASRRQQALQQVLAEEEKAQPQLAALSLAQPARNLRPHWERIA
EHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQ
WNNELAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNTLAAITLTLTADEVASALAQHAE
QRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADV
KTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVK
KLGEEGAALRGQLDALTKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPQDDIQP
WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQE
DEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWR
QVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLT
QLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRE
NTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQG
LTLDNLVHLANQQLTRLHGRYLLQRKASEALEVKVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLESTFAVK
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagcctgcgcctgaaaaacctgaactcattaaaaggcgaatggaagatt
gatttcacccgcgagccgttcgccagcaacgggctgtttgccattaccggcccaaccggt
gcggggaaaaccaccctgctggacgccatttgtctggcgctgtatcatgaaactccgcgt
ctctctaacgtttcacaatcgcaaaatgatctcatgacccgcgataccgctgaatgtctg
gcggaggtggagtttgaagtgaaaggtgaagcgtaccgtgcattctggagccagaatcgg
gcgcgtaaccaacccgacggtaatttgcaggtgccacgcgtagagctggcgcgctgcgcc
gacggcaaaattctcgccgacaaagtgaaagataagctggaactgacagcgacgttaacc
gggctggattacgggcgcttcacccgttcgatgctgctttcgcaggggcaatttgctgcc
ttcctgaatgccaaacccaaagaacgcgcggaattgctcgaggagttaaccggcactgaa
atctacgggcaaatctcggcgatggtttttgagcagcacaaatcggcccgcacagagctg
gagaagctgcaagcgcaggccagcggcgtcgcgttgctcacgccggaacaagtgcaatcg
ctgacagcgagtttgcaggtacttactgacgaagaaaaacagttacttaccgcgcagcag
caagaacaacaatcgctaaactggttaacgcgtcaggacgaattgcagcaagaagccagc
cgccgtcagcaggccttgcaacaggtgttagccgaagaagaaaaagcgcaacctcaactg
gcggcgcttagtctggcacaaccggcacgaaatcttcgtccacactgggaacgcatcgca
gaacacagcgcggcgctggcgcatattcgccagcagattgaagaagtaaatactcgctta
cagagcacaatggcgcttcgcgcgagcattcgccaccacgcggcgaagcagtcagcagaa
ttacagcagcagcaacaaagcctgaatacctggttacaggaacacgaccgcttccgtcag
tggaacaacgaactggcgggttggcgtgcgcagttctcccaacaaaccagcgatcgcgag
catctgcggcaatggcagcaacagttaacccatgctgagcaaaaacttaatacgcttgcg
gcgatcacgttgacgttaaccgccgatgaagttgctagcgccctggcgcaacatgccgag
caacgcccactgcgtcagcgcctggtcgcgctgcatgggcagattgttccccaacaaaaa
cgtctggcgcagttacaggtcgctatccagaatgtcacgcaagaacagacgcaacgtaac
gccgcacttaacgaaatgcgccagcgttataaagaaaagacgcagcaacttgccgatgtg
aaaaccatttgcgagcaggaagcgcgcatcaaaacgctggaagctcaacgtgcacagtta
caggcgggtcagccttgtccactttgtggttccaccagccacccggcggtcgaggcgtat
caggcgctggagcctggtgttaatcagtctcgattactggcgctggaaaacgaagttaaa
aagctcggcgaagaaggtgcggcgctgcgcgggcaactggatgcattaacgaagcagctt
cagcgcgatgaaaacgaagcgcaaagcctccgacaagatgagcaagcacttactcaacaa
tggcaagccgtcacggccagcctcaatatcaccttgcagccacaggacgatattcaaccg
tggctggatgcacaagatgagcacgaacgccagctgcggttactcagccaacgacatgaa
ttacaagggcagattgccgcgcataatcagcaaattatccagtatcaacagcaaattgaa
caacgccagcagcagctcttaacggcattggcgggttatgcactgacattgccacaggaa
gatgaagaagagagctggttggcgacacgtcagcaagaagcgcagagctggcagcaacgc
cagaacgaattaaccgcgctgcaaaaccgtattcagcagctgacgccgattctggaaacg
ttgccgcaaagtgatgatctcccgcacagcgaagaaactgtggcgctggataactggcgg
caggttcatgaacaatgtctcgcattacacagccagcagcagacgttacagcaacaggac
gttctggcggcgcaaagtctgcaaaaagcccaggcgcagtttgacaccgcgctacaggcc
agcgtctttgacgatcagcaggcgttccttgcggcgctaatggatgaacaaacactaacg
cagctggaacagctcaagcagaatctggaaaaccagcgccgtcaggcgcaaacgctggtc
actcagacagcagaaacgctggcacagcatcaacaacaccgacctgacgggttggctctc
actgtgacggtggagcagattcagcaagagttagcgcaaactcaccaaaagttgcgtgaa
aacaccacgagtcaaggcgagattcgccagcagctgaagcaggatgcagataaccgtcag
caacaacaaaccttaatgcagcaaattgctcaaatgacgcagcaggttgaggactgggga
tatctgaattcgctaataggttccaaagagggcgataaattccgcaagtttgcccagggg
ctgacgctggataatttagtccatctcgctaatcagcaacttacccggctgcacgggcgc
tatctgttacagcgcaaagccagcgaggcgctggaagtcaaggttgttgatacctggcag
gcagatgcggtacgcgatacccgtaccctttccggcggcgaaagtttcctcgttagtctg
gcgctggcgctggcgctttcggatctggtcagccataaaacacgtattgactcgctgttc
cttgatgaaggttttggcacgctggatagcgaaacgctggataccgcccttgatgcgctg
gatgccctgaacgccagtggcaaaaccatcggtgtgattagccatgtagaagcgatgaaa
gagcgtattccggtgcagatcaaagtgaaaaagatcaacggcctgggctacagcaaactg
gaaagtacgtttgcagtgaaataa
DBGET
integrated database retrieval system
