Escherichia coli APEC O78 (APEC): APECO78_10780
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Entry
APECO78_10780 CDS
T02445
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoa03019
]
APECO78_10780
Enzymes [BR:
ecoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
APECO78_10780
Messenger RNA biogenesis [BR:
ecoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
APECO78_10780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
PhoH
DUF6145
AAA_16
NTPase_1
AAA_23
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AGC86885
LinkDB
All DBs
Position
2216710..2220555
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgcgacagactgcgtttttctcggcgtctgcacggtgttaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggtt
agtcagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgcc
ggggaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgc
gggattaaagggctgatcggccatacccagccgcgtcgcctggcggcaagaacggtggcg
aaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgttagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagca
cacgaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgc
tatcgaccgattgttgaagaagccgacgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactgagtcaggaaagccctggcgacattctgatctttatgagtggt
gagcgggaaattcgcgataccgccgatgcgctgaacaagctaaatctgcgtcataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacagaaccgcgtgttccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacctcgctgaccgtaccgggg
attaaatacgttatcgaccccggtacagcacgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgaacccatttcgcaggcgtctgccaatcagcgtaaaggccgc
tgtgggcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccacggatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgat
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgtgtgcgtgaggcgatg
attatcacgtccgcgctttccattcaggatccgcgcgagcgtccgatggataaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgc
ctgtgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtat
cgcgaaattcacattgcgttgctgacgggtttactttcccatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaaaccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtggagcctgtcgctcagcatttg
attaaacgtacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgtcgtgaactctttattcgccatgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactgcgggccgaagtggaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctac
gaccagcgcatcagccacgatgtgatctctgcgcgccacttcgatagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaaaagcatgttgatcaaagagggc
gcagaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccg
ctgccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgc
cgcgaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgta
cccgcgccaaactatgccgaagcgtttttaggccgcgtcaaaccgctggagttaccgttg
ctcgacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggacgacaaa
aataagaagctaaaagaagggcgctcattacaggatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctgtccgcggtggcggatgacggtatcgagcagagcgggctgcatatc
tggagctttgggcaactgccggaaagctacgaacagaagcgcggcaactataaagtgaag
gcgtggccggcgctggtggatgaacgtgacagtgtggcgatcaaactgtttgataacccg
ctggagcaaaaacaggcaatgtggaacggtcttcgccgtctactgctgctaaatattccc
tcgccgatcaagtatttacatgagaagttaccaaacaaagccaagctgggactgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggatcaa
ctgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgag
aaagtgcgtgccgaactgaacgacacggtggtagatattgcgaagcaggtcgagcaaatt
cttacggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggca
ctggggctttctgacattaaagcgcagatgggcgggttggtatatcgcggatttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgg
ctggaaaaactggcggttgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcctgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
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