Escherichia coli APEC O78 (APEC): APECO78_13365
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Entry
APECO78_13365 CDS
T02445
Name
(GenBank) DNA-binding transcriptional activator SdiA
KO
K07782
LuxR family transcriptional regulator, quorum-sensing system regulator SdiA
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Pathway
ecoa02020
Two-component system
ecoa02024
Quorum sensing
ecoa02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
APECO78_13365
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
APECO78_13365
02026 Biofilm formation - Escherichia coli
APECO78_13365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecoa03000
]
APECO78_13365
Transcription factors [BR:
ecoa03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
APECO78_13365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autoind_bind
GerE
Sigma70_r4_2
HTH_20
Sigma70_r4
HTH_10
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AGC87402
LinkDB
All DBs
Position
complement(2744255..2744977)
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AA seq
240 aa
AA seq
DB search
MQDTDFFSWRRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPVPFTRPKVAFY
TNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSEAQPLWEAARAHGLRRGVT
QYLMLPNRALGFLSFSRSSAREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMNF
SKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatacggattttttcagctggcgtcgcacgatgctgttgcgttttcagaggatg
gaggccgcagaagaggtctaccatgaaatagagcttcaggctcagcagctagagtacgat
tactattcgttatgtgttcgccacccggtaccattcacgcgacctaaagtggctttctac
accaattaccctgaggcgtgggttagttattatcaggcaaaaaactttctcgcaattgat
ccggtgctgaaccctgaaaactttagtcagggccatttaatgtggaatgatgacttattc
agcgaagcacagccgttatgggaagccgcgcgcgcacatggtttacgccgcggtgtcact
cagtatttaatgctgccaaaccgggcgctgggctttttgtccttttcccgtagcagcgcg
cgcgaaatacccattcttagtgatgaactgcaattaaaaatgcagttactggtgcgcgaa
agtctgatggctctgatgcgtttaaatgatgaaatagtgatgacgccagagatgaatttc
agcaagcgcgaaaaagaaattttgaaatggacggcggaagggaagacatcagcagagata
gcgatgattttgtcaatctctgagaatacggtcaatttccaccagaaaaacatgcagaaa
aaaattaatgcaccaaataagacccaggttgcctgttacgcggccgctactggcttaatt
tga
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