Escherichia coli APEC O78 (APEC): APECO78_14645
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Entry
APECO78_14645 CDS
T02445
Name
(GenBank) putative ATP-dependent helicase
KO
K19789
DNA repair protein RadD
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecoa03400
]
APECO78_14645
DNA repair and recombination proteins [BR:
ecoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
APECO78_14645
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_30
AAA_16
SLFN-g3_helicase
zf-tcix
AAA_22
AAA
DUF7577
Zn_ribbon_3
UPF0547
TerL_ATPase
Motif
Other DBs
NCBI-ProteinID:
AGC87654
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Position
3032356..3034116
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AA seq
586 aa
AA seq
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MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH
RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD
CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH
IISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEDFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP
HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG
HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS
LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA
ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgatttttacacttcgcccatatcagcaagaagccgtggatgccacgctcaaccatttt
cgtcgtcataaaacccctgccgttatcgtgctgcctactggtgcaggtaaaagcctggtg
atagcggaactggcgcggctggcgcgtggtcgcgtgctggtgctggcacacgttaaagaa
ctggtggcgcaaaaccatgcaaaatatcaggcactgggactggaagccgatatttttgcc
gccgggctaaagcgcaaagagagccacggtaaagtggtatttggcagcgtgcagtcggtc
gcccgtaatcttgatgcctttcagggtgaattttcgctgttgattgtcgatgaatgtcac
cgtattggtgatgatgaagagagccagtatcagcaaatcctcactcacctgacaaaagtg
aatccccacttacgcctgctggggctgactgccacgccttttcgattgggcaaaggctgg
atctaccagttccattatcacggcatggtacgcggcgatgagaaagcccttttccgtgac
tgcatttatgagctgccgctgcgttatatgattaaacacggctatctgacgccgccagaa
cgactggatatgccagtagtacaatacgatttcagccgcttgcaggcacagagtaacggg
ctgttcagcgaagctgatctcaaccgtgagctgaaaaaacagcaacgcattacgccacat
atcatcagccagatcatggagttcgccgaaaagcgcaaaggggtaatgattttcgccgcg
acggtcgaacacgcaaaagagattgtgggattactgcccgccgaagatgctgcactgatt
actggcgacacccccggcgctgagcgcgatgtgttaattgaagattttaaagcccagcgt
tttcgctatctggtcaacgtcgcagtactgaccaccggatttgacgccccgcacgtcgat
cttatcgccattctgcgccctaccgaatcagtgagtctttaccaacaaattgtcgggcgc
ggtctgcgtctcgctcctggcaagactgattgcttaattcttgattatgcgggtaatcct
cacgatctctacgcgccggaagttggtacaccgaaaggcaaaagtgacaacgtcccggta
caggttttctgccctgcctgcggttttgccaacaccttttgggggaaaacgaccgccgac
gggacattgattgaacactttggtcgtcgctgtcagggatggtttgaagatgacgacggt
catcgcgaacagtgtgacttccgtttccgttttaaaaattgcccgcaatgtaacgcagaa
aatgatattgccgcccgccgctgccgcgaatgtgacaccgtactggttgatccggacgat
atgttaaaagcggcgctacgactgaaagacgcgctggtattacgctgtagcggcatgtct
ttgcaacatgggcacgacgagaaaggcgaatggttgaaaatcacctattacgatgaagac
ggcgcggatgtgagtgagcgtttccgtctgcaaacgcccgcccagcgaactgccttcgag
cagctttttatccgcccgcatacgcgcacaccgggcatccctctgcgctggatcaccgcc
gccgatatcctcgcccagcaagcgttactgcgacacccggattttgtcgtcgcccgcatg
aaaggtcagtactggcaagtgcgtgaaaaagtgttcgattacgaaggtcgttttcgtcgg
gcgcacgaattacgcggttaa
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