Escherichia coli APEC O78 (APEC): APECO78_22085
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Entry
APECO78_22085 CDS
T02445
Name
(GenBank) DNA-directed RNA polymerase subunit omega
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
ecoa
Escherichia coli APEC O78 (APEC)
Pathway
ecoa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecoa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APECO78_22085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecoa03021
]
APECO78_22085
03400 DNA repair and recombination proteins [BR:
ecoa03400
]
APECO78_22085
Enzymes [BR:
ecoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APECO78_22085
Transcription machinery [BR:
ecoa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APECO78_22085
DNA repair and recombination proteins [BR:
ecoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APECO78_22085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
AGC89134
LinkDB
All DBs
Position
4581113..4581388
Genome browser
AA seq
91 aa
AA seq
DB search
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcgtaactgttcaggacgctgtagagaaaattggtaaccgttttgacctggta
ctggtcgccgcgcgtcgcgctcgtcagatgcaggtaggcggaaaggatccgctggtaccg
gaagaaaacgataaaaccactgtaatcgcgctgcgcgaaatcgaagaaggtctgatcaac
aaccagatcctcgacgttcgcgaacgccaggaacagcaagagcaggaagccgctgaatta
caagccgttaccgctattgctgaaggtcgtcgttaa
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