Eupeodes corollae: 129939541
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Entry
129939541 CDS
T09463
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ecoe
Eupeodes corollae
Pathway
ecoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129939541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoe03019
]
129939541
Enzymes [BR:
ecoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129939541
Messenger RNA biogenesis [BR:
ecoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129939541
mRNA degradation factors
3'-5' decay
Pan complex
129939541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_EML_2
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
129939541
NCBI-ProteinID:
XP_055903558
LinkDB
All DBs
Position
1:268262222..268273292
Genome browser
AA seq
1239 aa
AA seq
DB search
MDFVYVGGDPIVQPDDILSISNVYDDPNGTGHYSPSFGGFNVVSSDVDYVELVPILADGG
ENFGVSAIAFDDYEELVWMGNQGGHVTSYYGGSLQKYTSFQVHATDIVRQITTNDSGILA
LTQTSLRHQIRRGIPKFTHRSKHMTEMVCMQQMSPHRLVMAGLQDEMIDLDLITLKETKL
QHVGTAGCTVLRKNSRYLFAGDPFGTVTLRDINSLNVEHTIKTHAGSLSDFDVQGNYLIS
CGFSGRQGTLSVDRFLMVFDLRMLRLVSPIQVLIEPQLLKFLPSQSSRLAVVSSYGQVQL
VDTVELSEPKVCMYQVNTSGSQCLSFDISSSSQAMSFGDQSGHISILASVNSPQPQFNAF
SRDTEFADPVAQLPMVPITDTNFPLSSIVLPHLVTGTRWFSDWPEELLRYQYRRPKPIDQ
DILATMKMQGPIGYSPNPRLVRRNQIPYVMEINGGNSTNGNGIQNSNKTTENGVKIIPRR
YRKVDMKYTKLGTQDFEFEQYNQTCFAGLEATLPNSYCNSMLQILYFIQPLRKRLLAHSC
VKEFCLSCELGYLFHMLDKSTAASPCQASNFLRSFRTVPEASALGLILSDRSSNVNLVSL
IQNWNRFILHQMHSEILDSHKNSHLNSLLFPATYDDYKALNEKSSRTTKPQSTQETSLEK
QPGEFTHTADESKEEERERSKINEETDISKLFGTRQMCTNRCFKCNEEKFKSNILLACDI
SYPSSNKELEHFNFGTILKGSLGTEKNIHAFCESCKKFSPTFQTVKVTGLPQILSVNCGL
SNEKDLSFLKRQLNRNFVSTPSESPAILNTTKPCRYGVNCSRGDCHFVHPDRKSPSNATN
NSSPNSRQNSWFPLNFSMAIDVNGELSVQTENSNTKSEESYSEDADSPVKRTSTPIDTPR
KNVNDTYKEYSLKAVVCQIDDGTQKNLVSLINVGSRGSDDQNQWYIFNDFSISPVSTQES
VWFTLDWKVPCVLFYSSVNTDDEFESTTEETENDKSFLNPFLQDMHNPIHPSVKSETLFK
PLQPNEMPQAGDLVAMDAEFVTLNPEENEIRPDGKTATIKPVHMSVARISCIRGQGPDEG
VPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSNKRLTALKNSYQKLKYLVDIGVIFVG
HGLKNDFRVINMIVPSDQIIDTVHLFYLPHHRMVSLRFLAWHFLGTKIQSETHDSVEDAR
TTLQLYKHYLKLQAEKKFTTALKNLYDRGKQLSWKVPED
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggactttgtttatgttggcggggatccaatagtccagccagatgatatcctatccata
tcaaatgtttatgatgacccaaatggcactggacactattccccgagctttggtggattc
aatgtggtctcctcggacgttgattacgtggaactggttcccatattggctgatggcggt
gaaaactttggagtctcagcaattgcattcgatgactatgaggaattggtttggatggga
aatcaagggggacacgtaacatcttactatggcggtagcttgcaaaagtatacatcgttt
caagtgcatgccactgatattgtacggcaaattacaactaatgattctggtatcttggca
ctaacccaaacatcactgcgtcatcagattcgacgaggtattccaaagtttacacacaga
tctaaacacatgacagagatggtgtgtatgcaacaaatgtctccacatagacttgtcatg
gccggtttacaagatgagatgattgatcttgatttgataacattgaaggaaactaagttg
caacatgttggaacagcgggctgcactgtgcttcgaaagaattctcgttatctattcgct
ggcgatccattcggtacggttacgcttcgcgatatcaattccctgaatgttgagcataca
atcaagactcacgctggaagtctctcggacttcgatgtacaaggcaattatttgatttct
tgtggatttagtggccgtcagggaacattatctgtcgatcggttcctgatggtttttgat
ctaagaatgcttcgtttagtttcaccaattcaagttcttattgaaccgcaattgttgaaa
ttcctgccatcgcagagttctcgactagctgttgtatcttcgtacggacaggttcaattg
gtggacacagttgaattgagtgagcccaaggtgtgtatgtaccaagtgaacacatccggc
agccaatgtctatcattcgacatcagttcatcatcgcaagcaatgtcgtttggggatcaa
tctgggcacattagcatacttgcatcggtcaacagtccgcaaccacagttcaatgcattt
tctcgcgacaccgagtttgctgatccagttgcccagcttcccatggttcccataaccgat
acgaatttccctctgtcttcaattgttttgccccatttggttactggcacaaggtggttc
agtgattggcctgaggaattgctacgttatcaatatcgccggccaaagcccatagaccag
gatattttggcaacaatgaaaatgcaaggacccattggttattccccaaatcctcgacta
gtaagacgcaaccaaataccatacgtgatggaaattaacggcggaaactcaactaatgga
aatggcattcaaaattcgaacaagacaaccgaaaatggagtgaaaattataccaaggaga
taccgaaaagtcgatatgaagtacacaaagctcggtactcaagacttcgaattcgagcag
tacaatcaaacttgtttcgctggcctcgaagcaacattgcctaattcgtattgcaattca
atgttgcagattttgtattttattcagccattgaggaagcgtttgttagctcattcgtgt
gtcaaagagttttgcttatcttgtgaattgggttacctatttcacatgctcgacaaatca
acagctgcatcaccatgtcaggccagcaatttccttcgttcttttcgtactgttcccgaa
gcttcagcattgggtttaattctatctgaccgttcgtcgaatgttaatcttgttagttta
atccagaactggaatcggttcatattgcatcagatgcattcagaaattctcgattcacat
aaaaacagtcatttgaatagcttactgttcccagcaacttatgatgattataaagcacta
aatgaaaaaagctcaagaacaactaaaccgcaatccacgcaagaaactagtttagaaaaa
caacctggagaattcactcatacagcagatgaatcgaaagaagaagaacgtgaacgcagt
aaaattaatgaagaaaccgatatcagtaaactttttggtactcgtcaaatgtgcacaaat
cgatgttttaaatgtaatgaagagaaattcaagtcaaatatactattggcatgcgatata
tcatatccgtcaagtaataaagaattggaacactttaattttggtacgatactcaaagga
tcccttggaaccgaaaagaacatccatgcattctgtgaaagctgtaaaaagttttcaccc
acatttcaaacagttaaggtaaccggtcttccacaaatcctttccgtaaattgtggttta
agcaacgaaaaggatttgtcattccttaaacgacaacttaatcgcaatttcgtatcgacg
ccctctgagagcccggcaatattgaataccaccaaaccgtgtcgatatggagtgaattgt
tcgcgtggtgattgtcattttgtacatccagacagaaagtctccttcaaatgcaacaaac
aatagttccccgaattctcgacaaaattcgtggttccctttaaacttttcaatggcaata
gacgtaaatggcgagttaagtgttcagactgagaatagcaatacaaaatctgaagagtca
tacagtgaagatgccgattctcctgtaaaacgtacatctactccaattgatactccaaga
aaaaatgtcaacgatacttataaggaatactcgcttaaagccgtagtttgtcaaatagat
gatggaacacagaagaatttagtgtctttgattaatgtgggctcccgtggatccgatgac
cagaatcagtggtatatttttaatgattttagcatttcaccagtttcaacgcaagagtct
gtttggtttactttggattggaaagtgccttgtgtgctcttctatagcagtgtgaataca
gatgatgaatttgagagtaccactgaggaaactgaaaatgataaatccttcttaaatcct
ttccttcaggacatgcataatccaatccacccgtctgttaaaagtgaaacactcttcaag
cctctgcaaccaaatgaaatgccgcaagcaggagatctagttgcaatggatgccgaattt
gtaactctcaatccagaggaaaatgaaattcgccccgatggcaaaacagcaactataaaa
ccagtacacatgagcgttgctagaatttcttgcattaggggccaagggcctgatgaggga
gttcctttcatggatgattatatatcaacacaagaaaaagttgtcgattatttaacacaa
ttttccggaattaaacctggcgatttggatgcgaactttagcaataaacgtctaacagct
ttgaagaactcttatcaaaaactcaaatatttagttgacataggagttatatttgttggt
cacggtttaaagaatgattttagagtaatcaatatgattgtgccatctgatcaaataatc
gacacagtacatttattctatttgccacaccatcgaatggtgtccctgaggtttctagct
tggcactttttaggaacaaaaatacaatcagaaacacacgactctgtcgaagatgcccgc
acaactctgcaactatacaagcactatcttaagttacaggccgaaaagaaattcacaaca
gcccttaaaaacttatacgatcgtggcaaacaattatcttggaaagtaccagaagattaa
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