Eupeodes corollae: 129944536
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Entry
129944536 CDS
T09463
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ecoe
Eupeodes corollae
Pathway
ecoe03013
Nucleocytoplasmic transport
ecoe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecoe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129944536
03015 mRNA surveillance pathway
129944536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoe03019
]
129944536
Enzymes [BR:
ecoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129944536
5.6.2.5 RNA 5'-3' helicase
129944536
Messenger RNA biogenesis [BR:
ecoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129944536
mRNA cycle factors
Common to processing body (P body) and stress granule
129944536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
AAA_22
NPHP3_N
UvrD-helicase
ATPase
AAA_16
SRP54
nSTAND3
AAA_5
AAA_10
Motif
Other DBs
NCBI-GeneID:
129944536
NCBI-ProteinID:
XP_055910009
LinkDB
All DBs
Position
2:complement(80054048..80064392)
Genome browser
AA seq
1136 aa
AA seq
DB search
MSVDTYGPSSQTLTFLDTEDNDLIGADTQASDFDFRDFTIPSQSQTQSSQLDPIATTSQS
NAFGRKLEIHSKLPGITNGMAALQFEEDDEDGALAVRELPPHACKYCGIHDPGTVVMCNN
CKKWFCNGRGNTSGSHIVNHLVRAKHREVTLHSDGPLGETVLECYSCGVRNVFVLGFIPA
KADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLISDRCFLAWLVKVPSDQEQLRARQISA
GQINKLEELWKENIEATFQDLEKPGIDTEPTQVLLRYEDGYQYEKVFGPLVRLEAEYDKK
LKESQTQENIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYAGELHEPWNEIGH
VIKVPDNYGEDIGLELKNNSGAPIKFTSSFAVDFIWKCTSFDRMLRALKVFAMDRNSVSH
YIYAHLLGHGRPDGWDDVFRGPVPKLFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPV
SFLALHNQIRNMETNVELKQLQQLKDETGELSRADEKRYRMLKRAAEFQLLEAADVICCT
CVGAGDPRLKSIKFSSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKIDF
PWPQADRPMFFLVTQGSEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITPYE
GQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPR
RLNVALTRSKYGTIIVGNPKVLSKQPLWNHLLNFYKDRKVLVEGSLNNLKESLIQFQKPK
KLVNTMNIGAHFMSTMMCDAKEAMVPGSMYDRSAMRGYSNFGPNSNVNLGVIGHSFNPSG
ASMNPLGGYPARNMGMDMFGRSHHDSISYISPERAQAAMNNMPVPVGMFMNMSNIPPRFY
NQHQQAIQAAKQGRRQAIGERVMPKNSRGDGSANNDKLFSKNRNSQGTGIPLTQQLMSQN
MSQPGFTLSQQHDLSQDFGQISQMDGILSQDVAFNVNVGDRPSIGFNNQSQFSQPY
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacacgtatggtcccagttcacagaccttgacgttccttgacaccgaggac
aatgatctaatcggtgccgatacccaagcttcagattttgattttcgcgatttcacaata
ccctctcagtcccagactcaatcctctcaattagatccaattgcaacaaccagccagagc
aatgcattcggacgcaaattggaaattcattcgaagctgccgggcattaccaacggtatg
gctgctctgcaatttgaagaagacgacgaagatggtgcgctggcagtgagagaactgcct
ccgcatgcatgcaagtattgtggcattcatgatcccggcacggtggtcatgtgcaacaat
tgcaagaaatggttttgtaatggacgaggcaatacatctggatcgcatattgtcaatcac
ttagtgcgtgccaaacaccgcgaagtaactttgcatagtgatggacccttgggggaaaca
gtattggaatgttattcatgtggtgtgcgcaacgtcttcgttttgggatttataccagcc
aaagcagattcggttgttgtgctcctatgcaggcaaccgtgtgctgcacaaaattccctc
aaggacatgaactgggatcaggaacaatggaaaccattaataagcgatcgttgtttcctc
gcatggttagtgaaagtgccttcggatcaagagcaattacgtgctcgccaaatatcagct
ggacagataaataagcttgaagaactctggaaggaaaatattgaagctactttccaagac
ctagaaaaaccaggcatcgataccgaaccaactcaagtgctgttgcgttatgaagatggt
tatcaatacgaaaaggttttcggaccattggtgcgtttggaagcggaatatgataaaaaa
ttaaaagagtctcagacccaagaaaatattgaggttcgctgggatgtaggtttgaacaaa
aagacaattgcctactttactttggccaaaaccgatagcgatatgaaactgatgcatggt
gatgagttgaggcttcgctatgcaggagaactgcatgagccatggaatgaaattggtcat
gttatcaaagtacccgataactatggcgaggatatcggcctggaattgaaaaacaattct
ggtgccccaattaaatttacttcgagcttcgcagtggattttatttggaaatgcacgtcg
tttgatcgaatgttaagggccttgaaggtcttcgccatggatcgcaattcagtttcgcat
tacatttatgctcaccttttgggacatggccgtcccgatggttgggacgatgttttccgt
gggcctgttcccaagttgtttagtgcaccaaatttgcctgatttgaatcgatcgcaagtg
tatgccgttaagcatgcaattcagcgaccattgtctctaattcagggaccaccaggaacc
ggaaaaacagtcacatcggctaccatagtttatcagctggtgaagcaaaatggtggcacc
gtgttggtgtgtgcgcccagtaacactgcagtcgatcagcttaccgaaaaaattcacaga
actaatttgaaagttgtcagagtgtgtgctaaatcccgtgaagccattgacagcccagta
agcttcttagcactgcacaatcaaattcgtaacatggaaactaacgttgaacttaagcag
ctgcaacagcttaaggatgaaacaggagaattaagtcgagccgatgagaaacgttatcgg
atgctcaagcgcgctgcggaatttcaacttctcgaggcggctgatgttatatgctgcact
tgcgtgggagctggtgatccgcgtcttaaaagcataaagttctcatcgatcctcatcgat
gaaagcatgcaatctactgaacctgaatgtatggttccagtggttcttggagcaaagcaa
ttgattttagtaggagaccattgtcaactaggccccgtagtaatgtgtaagaaagcagct
cgcgctggtctttctcagagtttatttgaacgcttggttgtgcttggaattcggccattc
cgcttagaagttcagtatcgtatgcatcctgagctttcgcaattcccttcaaatttcttt
tatgagggaagtttacagaatggagtgtgtgctgaagatcgtaagctgaaaatcgatttt
ccatggccgcaagcagatcgacctatgtttttccttgtcacacaaggttcagaagaaatt
gccggctcaggaacatcctatttaaatcgtaccgaagcagctaatgtcgagaaaataaca
acccgattcttaaaagctggtgttaaacctgaacaaattggcattattacaccatatgaa
ggtcaaagagcctacttggtgcaatacatgcaataccaaggaagtctgcactctaaacta
tatcaagaaatcgaaattgctagtgttgacgccttccaaggccgtgaaaaagacataatt
ataatgtcgtgcgttcgttccaacgaacgtcagggaattggttttctgaacgatcctcgt
cgattgaatgtggcgcttactcgctcaaagtatggaacaattattgttggtaatcctaaa
gttctatctaagcagcctctttggaatcatctattgaatttctataaggaccgaaaggtt
ttggtcgaaggttcgctaaataatctaaaggaatcactcatacagtttcagaagcccaaa
aaacttgttaataccatgaatattggtgcacactttatgagcaccatgatgtgcgatgcc
aaagaagcaatggtgccaggatcaatgtatgatcgttcggcaatgcgtggctatagtaat
tttggacctaactcgaatgttaatttaggtgttattggtcatagttttaatccatctgga
gcatcaatgaatcccttgggaggatatccagcacgcaacatgggcatggatatgtttgga
agatctcaccatgactcaatcagttatatatccccggaacgagcacaagcggccatgaat
aacatgccagttcctgtaggcatgttcatgaatatgagcaacataccacctcgtttttat
aaccaacatcaacaggctattcaagctgcaaaacaaggacgacgtcaagcaatcggcgaa
cgagttatgccaaagaactcacggggtgatggctcggcaaataatgataaactattttcg
aaaaaccgcaatagccaaggaaccggaataccacttactcagcaacttatgtcccaaaat
atgtcacaacctggctttacactttcgcaacaacatgatttgtctcaagattttggacaa
atttcccaaatggatggcatcctatcacaggatgttgctttcaacgtaaacgttggagac
cgtcctagcattggctttaataaccaaagccaattttctcaaccgtattga
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