Eupeodes corollae: 129951089
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Entry
129951089 CDS
T09463
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ecoe
Eupeodes corollae
Pathway
ecoe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecoe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129951089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoe03019
]
129951089
03041 Spliceosome [BR:
ecoe03041
]
129951089
Messenger RNA biogenesis [BR:
ecoe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129951089
Spliceosome [BR:
ecoe03041
]
Complex B
Other components
Prp19-related factors
129951089
Complex C
129951089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_15
TPR_8
Mad3_BUB1_I
PPR
ARM_TT21
TPR_10
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
129951089
NCBI-ProteinID:
XP_055919074
LinkDB
All DBs
Position
3:complement(73356884..73361432)
Genome browser
AA seq
856 aa
AA seq
DB search
MAFNSEDKSEGINLPEEDIPYEEEILRNAYSVKHWLRYLEHKAKSSNIEINTIYERALKE
LPGSYKIWYHYLRARRNQVRGSCASDVMYEEVNNCFERALVFMHKMPRIWIDYCIFMTNQ
LKITRTRHVFDRALRALPITQHHRIWPIYLKFAKKANVPETAVKIYRRYLKLFPDEMEEF
IEYLIAQGKLDDAAQQLATLVDNENFVSKHGKSNHQLWNELCELMSKHPDKVHSLNVDAI
IRGGLRRYTDQLSRLWNSLADYYVRSGLFDRARDIYEEAIQTITTVRDFTQVFDEYAQFE
ESSLSKRMENIANTKNISEEDDIEIELRLARFEYLMERRLLLLNSVLLRQNPHNVPEWHK
RVKLYDSKPNEIINTYTEAVQTVQPKLAIGKINTLWIEFAKFYEKNGQIEDARVVFEKAT
QVDYVKVDELATVWCEWAEMEIRQKNFNSALKLMQISTLMPKRKVDYNDETESVQDRLYK
SLKIWSMYADLEESFGTFKTCKSVYDRIIDLKICTPQIIINYGLFLEEHSYFEEAFRAYE
KGIALFKWPNVYDIWNSYLTKFLKRYGGSKLERARDLFEQCLEKCPLELAKYFYLLYAKL
EEEHGLARHAMAVYNRATTAVKPEEMFDMFNIFIKKAADIYGLPRTREIYERAIEVLPEE
RMRDMCIRFAEMETKLGEIDRARTIYAHCSQVCDPRITAEFWQTWKEFEVRHGNEDTMRE
MLRIKRSVQATYNTQVNMMAAQISNSTVDQTFKGGMHLLDTHISEKQNEQNINIMFVRGE
TQGLSKKDQESNPDEIDISDTDEEDSQNSMQNENQTCSAEETTMKKIRIEKQLIPKNVFK
GLKLLQKSDKSENIDN
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaattcggaagataaaagtgaaggtattaatttgccggaagaagatattcca
tacgaagaggaaatacttcgtaatgcatactctgttaaacattggttgcgctatctggag
cacaaagctaaatcatcaaatatcgaaattaacactatttacgaaagggcattaaaggaa
ctccctgggtcgtacaaaatttggtatcattacttaagagcaagaagaaatcaggttcga
gggagttgtgcttcggatgttatgtatgaagaagtaaacaattgtttcgaaagagcttta
gttttcatgcataaaatgccaagaatttggatagactattgcatttttatgaccaaccag
ttaaaaatcactaggactcgtcatgtttttgatagagccttaagagcattgcctataaca
caacatcatcgaatatggcccatatatttgaaatttgctaagaaagcaaacgtcccagaa
acggctgttaaaatttataggcgttacctcaagctctttcctgatgaaatggaagagttt
atagagtatctgattgctcaagggaaacttgatgatgcagcacaacagcttgcgacattg
gtagataatgaaaactttgtatcaaaacacggaaaatctaatcaccagttatggaatgaa
ttatgtgaactaatgtccaaacatcccgacaaagtccactcactcaatgttgatgctata
attcgaggaggtttaaggagatacacggatcagttgagtcgtttgtggaactcccttgcc
gactattacgtacgcagtggactctttgaccgtgccagagatatatatgaggaagctatt
caaactattactacagtaagagactttactcaagtctttgatgaatacgctcagtttgaa
gaatccagcctcagtaagcgtatggaaaacatagcaaacactaaaaacataagcgaagaa
gatgacattgaaattgaattacgcttagcgcgatttgaatatcttatggagcgccgctta
ttacttctaaatagtgttcttcttcgacaaaacccacataatgtacccgagtggcacaaa
agagttaaactatatgactcaaaaccaaatgaaattattaatacttacacagaagcagtt
caaacagttcaacctaaactagcaataggtaaaataaatacactttggatagaatttgct
aaattttatgaaaaaaatggacaaattgaggacgctcgtgttgtttttgaaaaagcaacc
caagttgattatgtaaaagtggacgagcttgcaactgtatggtgtgaatgggcggaaatg
gagatacgccaaaaaaatttcaattcggctttgaaactaatgcaaatatcaactttgatg
ccaaagcggaaggtagattacaatgatgaaacagaatccgtacaagaccgcctttataaa
tctttaaaaatatggtcgatgtatgctgatttagaggaaagtttcggaacatttaaaaca
tgcaaatctgtttatgaccgaattattgacttgaagatttgcactccacaaataataata
aactatggcctatttttggaagaacatagttactttgaggaagcatttagggcatacgaa
aaaggaattgctctttttaaatggccaaatgtgtatgatatttggaattcttatttaact
aaatttttgaagcgatacggagggtcaaaacttgaaagagcgcgtgatctttttgaacag
tgtcttgaaaagtgccctttggaacttgcaaaatatttttatcttttatatgcgaaatta
gaggaagaacatggtttagcccgacatgcaatggcggtttacaaccgcgcaactactgct
gttaagcctgaagaaatgttcgatatgttcaatatttttataaaaaaagccgcagatatt
tatggtttacctagaacgcgagaaatctacgagagagccatcgaagttcttcctgaagaa
cgtatgcgagacatgtgtattcgattcgctgaaatggaaacaaaacttggcgaaattgac
cgagctcgaacaatatatgcacattgtagccaagtctgcgatcctagaataacagctgaa
ttttggcaaacttggaaagaatttgaagttagacacggaaatgaagatacaatgcgtgaa
atgctcagaataaaacgttccgtacaagccacatacaatacgcaggttaacatgatggct
gctcaaatatctaacagtacagtagatcaaaccttcaagggtggcatgcatttgctagat
actcatatttcagaaaaacaaaatgaacaaaatataaatataatgtttgtgcgtggagag
acccaaggcttaagtaaaaaagatcaagaaagtaatccggacgagatagatatcagcgat
acagacgaggaagatagtcaaaatagcatgcaaaatgaaaaccaaacttgttcggcagaa
gaaactaccatgaaaaaaatacgcatagaaaaacaattaatacccaaaaacgtattcaag
gggctgaaattattgcaaaaaagtgataaaagtgaaaacattgataattag
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