KEGG   Paremcibacter congregatus: FIV45_05775
Entry
FIV45_05775       CDS       T06024                                 
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
ecog  Paremcibacter congregatus
Brite
KEGG Orthology (KO) [BR:ecog00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ecog03009]
    FIV45_05775 (rlmD)
Enzymes [BR:ecog01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     FIV45_05775 (rlmD)
Ribosome biogenesis [BR:ecog03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    FIV45_05775 (rlmD)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Cons_hypoth95 TRM5-TYW2_MTfase Methyltransf_31 Methyltransf_15 TRAM PabTrmU54_TRAM_dom
Other DBs
NCBI-ProteinID: QDE26814
LinkDB
Position
1297451..1298716
AA seq 421 aa
MRVNMTRVKIDHIGARGDGVAETPMGQVFVPFSIDGDDLEVKIQGKQGRIKHIHTPSPHR
SPAKCSHFGKCGGCTLQHVDPAYYSRWKQDQIRTALSHRGFDDVTVLSPAISPEGTRRRA
RLNVIGKGQGQAIVGFSEKASHNLIDITACPVMAPEIENFLAPLRTFLGAQLKPRQKMAV
QINLAENGLDIILESAGEPDLDLRMDVAAFAETHDVARICWLDTKLKKTFHEIMCERRKP
CVTFGGRQVYIPPGAFLQATKHGEAALTGFMQKAIGDADKVVDIFAGCGTFTIALIGDHA
VHAVEGNQDMIGSLKSSAHQMGKIRNLTTEVRDLFLRPLLPHELNKYDAVVLDPPRAGAR
DQAVEIAGSDVSNVVMISCNPATFARDARVLVDAGFDMGDILPVDQFLYTSHLEVVAHFT
R
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagagtgaacatgaccagagttaaaatagatcatatcggtgcccggggagacggtgtg
gcggaaacgccgatggggcaggtttttgttcccttttccatcgatggtgatgatctggag
gtcaagattcagggcaaacaaggccgcataaaacacatccataccccgtccccgcacagg
agcccggcgaaatgcagtcacttcgggaaatgtggcggctgtacattgcagcatgttgat
ccggcttattacagccgctggaaacaggatcagatcagaacggccctcagccaccgtggt
tttgacgatgtgaccgttctgagcccggcaataagcccggaaggcacgcgccgccgggcc
cggttgaatgtcatcgggaaggggcaggggcaggcgattgtcggcttctcggaaaaagcc
agtcacaatttaattgatattaccgcctgtccggtgatggcgccggagattgaaaacttt
ctggcgcccttgcggacttttttgggggcacagttaaagccgcgtcagaaaatggcggta
cagattaatttggctgaaaatggtcttgatatcattctggaaagcgcaggggaacctgac
ctggatttgcggatggatgtggcggcatttgcggaaacacatgatgtggcgcggatttgt
tggctggataccaaactgaaaaagacatttcacgagattatgtgtgaacgccgcaagccc
tgtgtcacttttggtgggcgccaggtctatattccgccgggggcctttctgcaggcgaca
aaacatggcgaggcagcgctgaccggtttcatgcagaaggcaatcggcgatgcggacaag
gttgtcgatatctttgccggctgcggcacctttaccattgccctgattggtgatcatgcg
gtgcatgcggtagaaggcaatcaggatatgattggttctctgaaaagcagcgcgcatcag
atgggcaagatacgtaatctgactacggaagtgcgggatttgttcctgcggccgttattg
ccccatgagttgaataaatatgatgcggttgttcttgatccgccccgcgccggggcccgg
gatcaggcggttgaaattgcagggtcggatgtctcaaatgtggtgatgatctcgtgcaat
cccgccacgtttgcccgggatgcacgggtgcttgtcgatgcgggatttgacatgggtgac
attctgcctgtggatcagtttctatacacctctcatctggaagttgtggcgcattttacc
cgttag

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