Paremcibacter congregatus: FIV45_08455
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Entry
FIV45_08455 CDS
T06024
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ecog
Paremcibacter congregatus
Pathway
ecog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV45_08455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecog03019
]
FIV45_08455
Enzymes [BR:
ecog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIV45_08455
Messenger RNA biogenesis [BR:
ecog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIV45_08455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
EAD7
Motif
Other DBs
NCBI-ProteinID:
QDE27316
LinkDB
All DBs
Position
complement(1885541..1887493)
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AA seq
650 aa
AA seq
DB search
MHRQSRKEYAMTHVNAPVLPESNLDESVNNESGFAEFDLAPSILKAIETEGFSNPTAIQQ
KSLPPLMDGNDLMGIAQTGGGKTAAFSLPTIHKLISNYSKPRQNMPKVLILAPTRELAMQ
IEQCIMTFSKGSKISSLVVAGGQPYPPQTNKLRRGVDILVATPGRLIDHIKRNNVKFNDT
ETFILDEADRMLDMGFIDDVQDIADSLPESHQTIFFSATMNQKVRNLSKSLLTDPVYVEI
EKKTMVADTISHKLMNVTRKDKAALLADILAGEGVEKALVFARTKIGADELSDALYEKGI
RSDAIHGDKRQRVREKILMNFRRGRTNVLVATDVAARGIDVDGITHVINYELPIEPENYV
HRVGRTGRAGAAGIAISFCDPSDMRLLVQIEQLIKIPIEVDASHAYHIDIAARGRGNGGK
GGGGRFSRDRAGRPGARREGGFSRDKNGSRPDRGFRDNKRDGAGNREERADRPNAGRFKA
YDNAKPARDRDERKSYDGARPERSERKFDNNDRPVRAERKFDDREGRRPAPRVKSTRPRQ
DKPVKKEAQRYDPWQEAKQFSDDPVLGKLLGKPPKFDSKKEDKSDFVKTGVKKSFKKVED
KPAASKKIRGGKKTLTTVKSGKPNRPKVKNNGGTKTFSPKRKPVKTNRAA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgcacagacagtcgcgaaaggaatatgccatgacgcatgtaaatgcgccagttctaccc
gagtccaatttagatgagtcggttaacaatgaatccggttttgccgagttcgatcttgcc
cccagcattcttaaggccattgaaacagaaggtttctctaacccaacagccattcagcag
aaatctttgccgcctttgatggacggtaacgacctgatggggattgcccagacagggggc
ggtaaaacggctgctttctctctgccgaccattcacaagctgatcagcaattattcaaag
ccccggcagaatatgccaaaggttctgatcctggcgccaacccgtgaactggcgatgcag
attgaacaatgcatcatgactttctccaaaggctctaaaatcagcagcctcgtggtggcc
ggtggacagccttatccgccacagaccaataaactgcggcgcggcgttgatattctggtg
gcgacaccagggcgtctgatcgaccatatcaaacgcaacaacgtcaagttcaatgacacc
gaaaccttcatccttgatgaagctgaccggatgctcgacatgggcttcattgacgacgta
caggatattgccgatagcctgccggaaagtcatcaaaccattttcttctccgccaccatg
aatcagaaggtacggaacctgtcaaaatccctgttgaccgatccggtttatgtggaaatt
gaaaagaaaaccatggttgctgacaccatctcccataagctgatgaatgtgacgcgtaaa
gataaagccgccttgctggccgatattcttgccggcgaaggtgtggaaaaagccctcgtg
tttgcccggaccaaaatcggcgctgacgagctttctgatgcgctttatgaaaaaggcatt
cgctcagacgccattcatggtgacaagcgccagcgggtgcgggaaaaaattctgatgaac
ttccgtcgcggccggaccaatgttctggtggccaccgatgtggcggcacgcggtattgac
gtcgatggcatcacccatgtgattaactatgaactgccgatcgagccggaaaactatgtt
caccgggtaggccggaccggacgcgcgggcgccgcagggatcgcgatctccttctgcgac
ccaagtgatatgcgcttgctggttcagatcgagcagctgatcaagattccgatcgaggtt
gacgcaagtcatgcctaccatattgatattgccgcccgcggcagaggcaacggcggcaaa
ggtggcggcggacgtttctcccgcgatcgcgccggtcgtcctggtgcacgtcgggaaggt
ggcttcagccgcgataaaaacggtagtcgtcctgaccggggtttccgcgacaacaaacgt
gatggcgctggtaaccgtgaagaacgcgcagatcggcctaacgccggacggttcaaggcc
tatgataacgccaagcccgcacgggatcgggatgaacggaagtcctatgacggcgcaaga
ccagagcggtctgagcgtaaatttgacaataacgacagacctgtacgggccgagcggaaa
tttgatgatcgcgaaggtcgccgtccagcaccacgggtcaaatccacccgccctcgtcag
gataagccagtaaaaaaagaagcacagcgttatgacccttggcaggaagccaagcagttt
tctgacgatcccgtactgggcaagttgcttggcaagccgcctaagtttgacagcaagaaa
gaagacaagtctgatttcgtcaaaaccggggtcaagaaaagctttaaaaaagtagaagac
aagcctgccgcaagtaagaaaatacggggtggcaagaagacattgacgacggtgaaatcc
ggcaagcccaatcggcctaaagtcaaaaacaacggcggtacaaaaaccttttcgccaaaa
aggaaacctgtaaaaactaaccgcgctgcctag
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