Paremcibacter congregatus: FIV45_08620
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Entry
FIV45_08620 CDS
T06024
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ecog
Paremcibacter congregatus
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecog03032
]
FIV45_08620 (topA)
03400 DNA repair and recombination proteins [BR:
ecog03400
]
FIV45_08620 (topA)
Enzymes [BR:
ecog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FIV45_08620 (topA)
DNA replication proteins [BR:
ecog03032
]
Prokaryotic type
DNA Topoisomerases
FIV45_08620 (topA)
DNA repair and recombination proteins [BR:
ecog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FIV45_08620 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QDE27348
LinkDB
All DBs
Position
1921230..1923854
Genome browser
AA seq
874 aa
AA seq
DB search
MKTVVVESPAKAKTINKYLGKDYKVLASFGHVRDLPSKNGSVDPDEDFAMIWEVDSDSKK
RIKDIADATKESDELILATDPDREGEAISWHVLELLKAKRGVMKDVKVKRVVFNEITKSA
ILQAMEHPRDIDSPLVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVSLRLICD
RELEIEQFNSEEYWTVDVDLANQAKETFTAQLALLNGEKLKKFTLTTEKEAAAAEQAVKG
SNFTISTVESKPAKRFPAPPFTTSTLQQEASRKLGFNAQRTMRCAQKLYEGIDIGGETVG
LITYMRTDGVTIAKEAVDGCRDVIAAEYGGNYVPSALRVYKSKAKNAQEAHEAVRPTDMA
RLPKTVADRLDEDQRRLYELIWKRTVASQMAEAKFERTTADILSEDGKVGLRANGSVQIF
DGFLKLYQEGKDDADNDENDKRLPKLTQGEKVSQEKIIPTQHFTAPPPRFTEASLVKKME
ELGIGRPSTYASVLTVLRDRNYVVMDKNRFVPEDKGRLVTAFLQNYFSKYVEFDFTANME
ELLDKVSNGDIPWKKVLADFWREFHTAVEGTKELRVSDVLERLNQFLAPFIFPEKEDGSN
PRACPKCDDGILSLKTSRYGAFIGCSHYPECNYTRKMNNGDGDEEDGNRVVGTDPETGME
VTVRAGRFGPYVQLGEPADKTEKPKRGSIPKGMDAASVDLEKALKLLSLPRTVGLHPEDG
KVIKTAIGRFGPYVSHAGVFASLKDPEDVFNLGLNHAVELVAEAKRKKGAAATPIKELGK
HPEDDEPINVYDGRYGPYVKYKRVNATIPKDKDPQSVTLEEALELIKAKASKGKKKPAAK
KAPAKKKAPAKKAAAKKAPAKKPATKKKTAKADN
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgttgttgtagaatcaccggcgaaagccaagacaattaataaataccttggc
aaggactataaggtcttggcaagctttggccatgttcgcgatttgccgtcgaaaaatggc
tctgtagatccggacgaagattttgccatgatctgggaagtcgacagcgacagcaaaaaa
cgcatcaaggatattgccgatgcgaccaaggagtctgacgaactgatcctcgccaccgac
cccgaccgcgaaggggaagccatttcctggcatgtgctcgaactcttgaaagccaagcgt
ggcgtgatgaaagacgtcaaagtcaaacgggtggttttcaatgagattaccaaaagcgcc
attctacaggccatggaacatccccgtgatattgactcgcctctggttgatgcctatctc
gcccgacgggcgctcgattatctcgtgggctttaatctgtcgcctgttctgtggcgcaag
ctgcccggttcccgctccgccggccgggtacaatcggtgtccctgcggctgatctgtgac
cgtgaactggaaattgagcagttcaactcagaagaatactggactgtggatgttgatctc
gccaatcaggccaaggaaaccttcaccgcccaactcgccctgctgaacggtgaaaagctg
aaaaaatttaccctgaccaccgagaaagaagcggcagcggcggaacaggcggtcaaagga
tccaacttcaccatttcaacggtggaaagcaaaccggccaagagatttccggccccgccc
tttaccacatcgaccctgcaacaagaagcctcgcgaaaactcgggtttaatgctcagcgc
accatgcgctgtgcccagaagctctatgaagggatcgatattggcggcgaaacggttggt
ctgatcacctatatgcgtaccgatggcgttaccatcgccaaagaagctgttgacggctgc
cgcgatgttattgcggccgaatatggcggcaattatgtgccatctgcgctgcgggtgtat
aaatccaaagccaagaatgcccaggaggcccatgaggcggtacgtcctaccgacatggcc
cgcttgccaaaaacagttgcggaccggctcgatgaagatcaacgccgcctgtatgaattg
atttggaaacgtacggtcgccagccagatggcggaagccaaattcgaacgcaccactgcc
gacattctgtctgaagacgggaaagtcggcctgcgtgccaacggctccgtacagattttt
gacggcttcctgaaactctatcaggaaggcaaggatgacgctgataacgatgaaaacgat
aagcgtctgcccaaactgacccagggcgaaaaagtctcccaggaaaaaattatcccgacg
caacatttcacggctccgccgccccgctttaccgaggcctctctggtcaagaagatggaa
gaactcggcattggccgcccgtcgacttatgcgtccgtgctcactgtgctgcgggatcgt
aattatgtggtgatggacaaaaaccgttttgtgcccgaagacaagggccgtctggtcacc
gctttcctgcagaattatttcagcaaatatgttgaatttgacttcaccgccaatatggaa
gaactgctcgacaaggtttctaatggcgatatcccatggaaaaaagttctggcggacttc
tggcgtgaatttcataccgccgttgaaggcacgaaggaattgcgcgtttcagacgtgttg
gaacgccttaaccagttcctggcgccctttattttcccggaaaaggaagatggttcaaac
ccccgcgcctgcccaaaatgtgatgatggcattctcagcctgaagaccagtcgttacggc
gcctttatcggctgttcgcattacccggaatgtaattatacccggaaaatgaacaatggc
gacggtgacgaggaagacggcaaccgcgtggtcgggacggatcccgaaactggtatggaa
gttaccgtgcgcgccggacgctttggtccttatgttcaattgggtgaaccggctgacaaa
accgaaaaacccaaacgcggatcaattcccaagggcatggatgcggcctccgtcgatctg
gaaaaggccctgaaacttctgtccctgccccgtactgtggggttacacccggaagacggt
aaagtcatcaaaaccgccattggccgttttgggccgtatgtgtcacacgccggtgttttc
gccagcctgaaagacccggaagatgtctttaacctcggtctgaaccatgccgtagagctg
gtcgcggaagccaagcgcaaaaaaggcgccgccgccacgccgatcaaggaactgggcaag
catcccgaagacgacgagccgatcaatgtctatgatggccgttatggcccctatgtcaaa
tacaagcgcgtaaacgccacaattccgaaggacaaagatccgcaatcggtgacactggaa
gaagcgcttgaactgatcaaggcaaaggcctctaaaggcaagaaaaaaccagccgccaaa
aaagcaccggccaagaaaaaggcgccggcgaagaaggcagctgccaaaaaggcccccgcc
aagaaaccggcaaccaagaaaaaaaccgcgaaggctgacaattaa
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