Paremcibacter congregatus: FIV45_10865
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Entry
FIV45_10865 CDS
T06024
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ecog
Paremcibacter congregatus
Pathway
ecog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV45_10865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecog03019
]
FIV45_10865
Messenger RNA biogenesis [BR:
ecog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FIV45_10865
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
RNase_J_C
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QDE27741
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Position
complement(2397552..2399216)
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AA seq
554 aa
AA seq
DB search
MAKSNSKDALYFLPLGGSGEIGMNLNLYQTEGKWLMVDCGISFADTYLPGIDLIMPNTSF
IEERRDKLAGLIITHAHEDHVGALAHLWERFRCPVYATPFTMILIRLKLTEAGLLDQVPL
IEVPLEGSVEVGPFTVDFLSLTHSIPEPNAVVIKTKLGSVFHTGDWKLDPNPLLGNKTNE
AKIRKAGDNGVLALVCDSTNVFNVEPSGSEKKVRQTITELLATKKGKVFCATFSSNVARV
DTLAQAARDNGRDVCLVGRSLKRNVAAAREAGYLKDFPNIVDESDAGYLPNDRVLYICTG
CQGEARAALMRITQGNNRDVTISGGDTVIFSSKIIPGNETLIGRLHNALIGMGAEVITEK
DAFVHVSGHPGQKELAQMYEWTRPEILVPVHGELRHMQRQAEFGRAQGIGKTIVPSNGTL
IRLAPGPVEIVERFHVGRLALDGHFLIPDEDDAIVTRRRILYNGALVVSLVVDDAGDVLS
PPQVSNLGNPAAGQEPFDEVIRDAALAAIGGLTRKQRMNDTKISEAVRVAARKAAKYYTN
KETGPVTSVNVTRI
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatcaaacagtaaagatgccctgtacttcctgccgcttggcggttccggggag
atcggcatgaacctcaatctgtatcagaccgaggggaaatggctgatggtggactgcggc
atttcatttgccgatacatacttgccgggtattgacctgatcatgcccaacaccagcttt
atcgaagaacgccgggacaagctggcgggattgatcattacccatgcccacgaagatcat
gtgggcgctttggcgcatttgtgggaacggttccgttgtcctgtatatgccacgcctttc
accatgattctgatccgcctaaagctgaccgaagccgggctgcttgatcaggtgccgttg
atcgaggttccgctggagggtagtgtcgaggtcgggcctttcacggttgatttcctgtcg
ctgacgcattcgataccggagcccaatgcagtcgtgattaaaaccaagctgggctctgtt
tttcacacgggggactggaaactggaccctaatccgttgctgggtaataagaccaacgaa
gctaaaatccgtaaagccggtgataacggtgttctggcgctggtgtgtgattcgaccaac
gtatttaacgtcgagccttccgggtccgagaaaaaggtgcggcagacgatcacggaactt
ctggcaacgaagaagggtaaggttttttgcgccaccttttcgtccaatgtcgcacgggtc
gatacgctggcgcaggccgcgcgggacaatggccgcgacgtctgtctggtcgggcggtcc
ctgaaacgcaatgtggcggcggcgcgggaagctggctatttgaaagatttccccaatatc
gttgatgagagtgacgccgggtatctgcccaatgaccgggtgctgtatatctgcaccggc
tgtcagggagaggcgcgcgccgccctgatgcgcatcacccagggcaataaccgggatgtg
accatcagcgggggcgacacggtgattttctcttccaagatcattccggggaacgagacg
ttgattggtcgtctgcataatgcattgatcggcatgggggccgaggtgattacggaaaaa
gacgctttcgtgcatgtgtcgggtcatccggggcaaaaggaattggcccagatgtatgaa
tggacaaggcccgaaattctggtgccggtgcatggcgagctgcgtcatatgcaacgacag
gctgaatttggtcgggcacagggtattggcaaaaccatcgttccgtcaaacggcaccctg
atcaggctggcgccgggcccggttgaaattgtagagcggtttcatgtcggccgactggcc
ctggatgggcattttctgattccagatgaggatgacgccatcgttacccgccgccgtatc
ctgtataatggggcgctggtggtgtcgctggtggtcgatgacgcgggggatgtcctgagc
ccgccacaggtgagcaaccttggcaatcccgcggccggacaggaaccttttgacgaggtt
atccgcgacgcggctcttgccgcgatagggggcttgacccggaaacagcgaatgaacgat
accaaaatctcagaagccgtgcgcgttgcagcccgcaaggcggcgaaatattataccaac
aaggaaaccgggcccgtgacatcggtgaatgtcacccggatataa
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