Paremcibacter congregatus: FIV45_14545
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Entry
FIV45_14545 CDS
T06024
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ecog
Paremcibacter congregatus
Pathway
ecog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIV45_14545 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecog03021
]
FIV45_14545 (rpoC)
03400 DNA repair and recombination proteins [BR:
ecog03400
]
FIV45_14545 (rpoC)
Enzymes [BR:
ecog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIV45_14545 (rpoC)
Transcription machinery [BR:
ecog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIV45_14545 (rpoC)
DNA repair and recombination proteins [BR:
ecog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIV45_14545 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QDE28401
LinkDB
All DBs
Position
complement(3288060..3292259)
Genome browser
AA seq
1399 aa
AA seq
DB search
MRQEVMNFFNPVSKPETFDTIKITIASSEHIRSWSFGEIKKPETINYRTFKPEKDGLFCA
RIFGPMKDYECLCGKYKRMKYRGITCEKCGVEVTLSKVRRDRMGHIDLAAPVAHIWFLKS
LPSRIGLVLDMTLKDLERVLYFEYFIVTEPGLTPMKMKQLLNEDEYIRAQEEYGEDSFTA
GIGAEAIKTLLENVDLEQERDDLRVELAETKSELKPKKIVKRLKVIEGFLESDNRPEWMI
LDILPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELLLHQCGLPKKMALELFKPFIYARLDKLGIATTIKQAKKLVEKERREVWDVLDVVIRE
HPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPSNGKPIIVPSQDIILGLYYITLDKVGEPGEGMIFGDMEEIEQALF
NGVITLHSKITARYHTVDENFNPISMRVETTAGRMMLANHLPKHPNISFDLVNQNLTKKN
ISNIIDVVYRHAGQKKTVLFADGIMRLGFREACNAGISFGKDDMIIPDAKEGMIDETTAA
VKEFEAQYNQGLITQGEKYNKVVDAWSQCTDKVADAMMAEISKTGVDENGRTLDINSIFM
MADSGARGSAAQMKQLAGMRGLMAKPSGDIIEKPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVTIEEDCGTLRGIDIKEVAEGGDVTVTLGDRILGRCA
AVDICDPVSGAVIAEAGTHLEENIVEAVETAGVSTVKVRSALTCETRGGICCKCYGRDLA
RGIPVNLGESVGVIAAQSIGEPGTQLTMRTFHIGGTASSVSEQSVHEASHDGKVKLLNRN
VVTDSKGRLIVMSRNMEIVIVDDEGRERVTYKAPFGSHLIKDEGQTVIHGDKLVEWDPYT
LPIITEQGGTVRFVDLTEGVSVRETVDEATGIASRVVVDWRSQPKGADLRPRITLRNDND
EVIELTNGTEARYFMSVGAILSVNDGDEVHAGDVVARIPREASKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGYVEFGRDYKNKRRISIRSKDEEDTTVEYLIPKGKHISVQEGDFIR
RGEYLIDGNPAPHDILKTMGVEALANYLVDEVQDVYRLQGVGINDKHIEVIVHQMLQKVE
ITSSGESTFLLGEQVDREEFEEANIKLENQGRLPAKGEPILLGITKASLQTRSFISAASF
QETTRVLTEAAVAGKADTLVGLKENVIVGRLIPAGTGSKMQEFRHLAKKRDDKIKAEGTQ
PKQTLPTLDDDSVGATESA
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaagaagtaatgaatttcttcaacccggtttcaaaaccggagacgtttgacacg
atcaagatcaccatcgccagctcggaacatatccggtcctggtcttttggcgagatcaag
aaacctgaaaccatcaattaccggaccttcaagccggaaaaagatggcctgttttgtgcc
cgtatctttggtccgatgaaggactatgaatgtctgtgcggtaaatacaagcgtatgaag
tatcgcgggatcacctgcgagaaatgtggcgttgaagtgaccctcagcaaggtgcgtcgt
gaccgcatgggtcatatcgacctcgcggcccctgtggcgcacatctggtttctgaaatcc
ctgccaagccgtatcggtctggtgctcgacatgacgttgaaagatctggagcgcgtgctc
tatttcgaatatttcatcgttaccgagccgggtctgaccccgatgaaaatgaagcagctt
ctgaacgaagatgaatatatccgcgcccaggaagaatatggcgaggacagcttcaccgcc
ggtatcggcgcggaagccatcaaaacgttgctggaaaatgttgatctcgagcaggagcgc
gacgatctgcgggttgagctggcggaaaccaaatccgagctgaagccaaagaaaatcgtc
aagcgtctgaaagtcattgaaggcttcctcgagtccgacaatcgtccggaatggatgatc
cttgatatcctgccggttattccaccggaattacgtcctctggtgccattggatggcggt
cgtttcgcgacctctgatctcaatgatctgtatcgtcgggtgatcaaccggaacaaccgt
ctgaaacgtctgattgaactgcgtgcgccggacatcatcgtccgcaacgaaaaacgtatg
ttgcaggaagcggttgacgccctgtttgacaacggtcgtcgtggccgggtgattacaggc
gccaacaagcgtccattgaaatccctgtccgacatgctgaaaggcaagcaaggtcgcttc
cgtcagaacctgttggggaaacgcgtggattattccgggcgttcggtgattgttgtggga
ccggaattgctgctgcatcaatgtggtctgccgaagaagatggcgctagagctgttcaag
ccgttcatttatgcgcgtcttgacaagctggggattgccaccaccatcaaacaggccaag
aagcttgtggaaaaagagcgtcgcgaagtctgggacgttctggatgtggttattcgcgaa
catccgatcctgcttaaccgggcgccgacactccatagactggggatccaggcctttgaa
ccggttctgatcgaagggaaggccattcagcttcatcctctggtctgtacggccttcaac
gctgactttgacggtgaccaaatggccgttcacgtgccattgagcctcgaagcgcagctg
gaagcccgcgtgttgatgatgtcaacaaacaacatcctcagcccgtcaaacggcaagccg
atcatcgtgccgtcccaggatattattctgggtctgtattacatcactttggataaagtg
ggtgagccgggcgaaggcatgatctttggtgatatggaagaaattgaacaggctctgttc
aacggcgttattacgctgcattccaaaatcaccgcgcgctatcatacggttgacgaaaac
tttaacccgatttccatgcgggttgaaaccacggcgggccggatgatgctggccaatcac
ttgccgaagcatccgaatatttccttcgatctggtgaaccagaatctgaccaagaagaat
atctccaacatcattgatgtggtgtatcgtcacgcgggtcagaagaaaacggttctgttt
gccgatggcatcatgcgtctcggtttccgggaagcctgtaacgccggtatctcctttggt
aaggatgacatgatcatcccggacgccaaagaaggcatgattgacgaaacaaccgctgct
gtgaaggaattcgaagcccagtataaccaaggtctgatcacccagggcgaaaaatacaac
aaggtggtggatgcctggtcacaatgtaccgataaagtggctgacgccatgatggcggaa
atttccaagaccggcgttgacgaaaacggccggactctggacatcaactccatctttatg
atggccgattccggggcgcgtggttccgcggcgcagatgaaacagcttgccgggatgcgg
ggtctgatggccaagccgtccggtgacattatcgaaaagccgattatttccaactttaaa
gaaggcctcagtgtccttgaatactttaactccacccatggggcgcgtaagggtcttgcg
gatacggcgctgaaaaccgccaactccgggtatctgacccgtcgtctggtggatgtgtct
caggattgcgtgaccatcgaagaagattgcggtaccttgcgtgggatcgacatcaaggaa
gtcgccgaaggtggcgatgtgactgtgacattgggtgatcgtatcctcggccgttgtgcg
gcggttgatatctgtgacccggtcagcggcgccgtgattgccgaagccggcacgcatctg
gaagaaaatatcgttgaagcggtcgaaacggccggcgtatccaccgtcaaggtgcggtct
gcgctgacctgtgaaacccgtggcggcatctgctgtaaatgttatggccgcgacctggcc
cggggtatcccggtcaacctgggtgagtctgtcggtgttatcgccgcccagtccatcggg
gagccaggtactcagctgaccatgcggaccttccatattggcggtacggcctcgtccgtg
tccgagcagtctgtccatgaagcgtcccatgacggtaaagtcaaactgctgaaccgcaac
gtggtgaccgattccaaaggccgcctgattgtcatgagccgcaacatggaaatcgtcatc
gttgatgatgaaggccgtgagcgcgtaacctataaggcgccgttcggttctcatttgatc
aaggatgaaggccaaacagttattcatggtgacaagcttgtggaatgggatccttatacc
ctgccgatcatcacagagcagggcggtaccgtccgctttgtcgatctgacagaaggtgtt
tctgttcgtgaaaccgttgacgaggcgacaggtattgccagccgcgttgtggttgactgg
cgttctcagcccaagggagcggatctgcgtccgcgcattaccctgcggaatgataacgac
gaggttatcgaactgaccaacggtacggaagcccgttacttcatgtctgtcggcgccatt
ctttcggttaatgacggcgatgaagtgcatgccggtgacgtggtggcgcgtattccgcgc
gaggcatccaagaccaaggatattaccggtggtctgccccgggttgcggaattgttcgaa
gcccgtcgtccgaaagatcatgcggtcatcgctgaaatcgatggctatgtggaattcggg
cgcgactataagaacaagcgtcgcatcagcatccgttccaaagatgaagaagatacaaca
gttgagtatctgattccgaagggcaagcatatttccgttcaggaaggtgacttcatccgt
cgtggtgaatatctgatcgacggcaatccggcgccgcacgatattctgaaaaccatgggc
gttgaggctctggccaactatctggtggatgaggtacaggatgtgtaccgtctgcagggt
gtgggcatcaacgacaagcatatcgaagtgatcgtgcatcagatgttgcagaaggtcgag
attacctcttccggtgaatcaaccttcctgctcggggaacaggtggatcgtgaagagttc
gaggaagccaacatcaagcttgagaatcaagggcgtttgccggctaaaggcgagccaatc
cttctcgggatcaccaaggcgtcactgcagacgagatcctttatctctgctgcgtccttc
caggaaacaacacgggttctgaccgaggcggcggttgccggcaaggcggatactttggtt
ggcctgaaagagaatgtgatcgtgggtcgtttgatcccggcgggtaccggttccaagatg
caggaattccgtcacctggccaagaagcgtgatgacaagatcaaggccgaaggcacgcag
ccgaaacagactctgcccactctggatgacgactcagtcggcgctacagaatcggcataa
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integrated database retrieval system
