Paremcibacter congregatus: FIV45_18265
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Entry
FIV45_18265 CDS
T06024
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ecog
Paremcibacter congregatus
Pathway
ecog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIV45_18265 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecog03019
]
FIV45_18265 (pnp)
03016 Transfer RNA biogenesis [BR:
ecog03016
]
FIV45_18265 (pnp)
Enzymes [BR:
ecog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FIV45_18265 (pnp)
Messenger RNA biogenesis [BR:
ecog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FIV45_18265 (pnp)
Transfer RNA biogenesis [BR:
ecog03016
]
Prokaryotic type
tRNA degradation factors
FIV45_18265 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QDE29081
LinkDB
All DBs
Position
4171723..4173849
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AA seq
708 aa
AA seq
DB search
MFEIHRKEINWGGRTLVLETGQVARQANGAVMVTYGETSCLVAATGAKTPKAGIDFFPLT
VNYQERAYSAGKIPGGFFKREGRPSEAETLICRLIDRPIRPLFVDGYKNETQIVATVMSH
DLENNPDIAALVGTSAALTISGLPFMGPIGAARVGYIDGEYVLNPTFEQLETSDLDLVVA
GTRDAVLMVESEANELSEEVMLGAVMFGHEQMQPVIDAIIELAEVAAKEPMELPEPVDHS
ALEAKIAELAEADMRAAYAEKIKQTRSGLLGEIKDRVKAELVAEDDDAMSGVVSELLKKL
EKKIVRGDIIKTRNRIDGRELDKVRAISSHVNILPRAHGSALFTRGETQAAVVTTLGTGD
DEQFIDALTGTYKERFMLHYNFPPYSVGEVGRMMGTSRRETGHGKLAWRALRAVLPTPEE
FPYTIRIVSEITESNGSSSMASVCGASLSMMDAGVPLKRPVSGIAMGLIMEGDDYAVLSD
ILGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITREIMDVALKQAAGGRAYILEEMNSA
LSGAREEMSDHAPRIETIQINREKIREVIGTGGKVIREICEVTGAKVDIEDDGTIKVSSS
DLSAIEAALKWIEGIVAEPEVGKIYEGKVVKTVDFGAFVNFLGSRDGLVHISELEDHRVK
QVSDVVSEGDIIKVKVLGIDDRGKVRLSRRVVDQETGEDLQNKEGDEE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatacatagaaaagagattaactggggtggccggacattggttctggaaacc
ggtcaagtggcccgccaggcaaatggcgccgtgatggtgacttacggcgagacatcctgt
cttgtcgcggccacaggggccaaaacacccaaagcagggattgattttttcccgctgaca
gtaaactatcaagaacgcgcttattccgccggtaaaattccaggcggtttttttaaacgt
gaaggccgtccatccgaagcggaaacactgatctgtcgtttgatcgaccgtccgatccgc
cctctgtttgttgatggctacaagaatgaaacccagatcgttgcgactgtgatgtcccat
gacctggaaaataaccctgacatcgccgctcttgtaggcaccagtgctgcattgaccatt
tccggtctgccgttcatgggtccgattggcgccgcacgtgttggttatatcgacggcgaa
tatgttctgaacccgacgttcgaacagctggaaacatccgatcttgatctggtggttgcc
ggaacccgcgatgctgtattgatggtggaatcagaagccaacgagctgtctgaagaagtt
atgcttggtgcggtgatgttcggtcacgaacagatgcagccggtgatcgatgcgatcatc
gaactggcggaagttgcggccaaagagccgatggaactgccagagccggtagatcattcc
gcgctggaagccaaaatcgcagaattggcggaagccgacatgcgtgcggcttatgcggaa
aaaatcaaacagacccgatccggtcttttgggtgaaatcaaggaccgcgttaaggcggaa
ctggtggcggaagatgacgacgccatgtccggtgtggtttctgaactgctgaaaaagctg
gaaaagaaaattgtccgcggcgacatcatcaaaacccgtaaccggattgatggccgtgaa
ctggacaaggtccgggcgatttcctctcatgtgaacattttgccccgggcacatggctcc
gccttgtttacccgcggggaaacacaggctgccgttgtaaccacactgggtaccggtgat
gatgaacagttcatcgacgccctgacaggcacctacaaagaacgtttcatgctgcattat
aacttcccgccttattctgtcggtgaagttggtcgcatgatgggcaccagccgccgggaa
accggtcacggtaaactggcctggcgggcgcttcgtgcggttctgccaacaccagaagaa
ttcccttacaccatccggatcgtgtctgaaatcacagaatccaacgggtcctcttccatg
gcgtctgtttgtggggcgtccctgtccatgatggatgcgggtgttcctctgaagcggccg
gtttccggtatcgccatggggctgatcatggaaggtgacgattatgcggttctctctgac
attctgggggatgaagatcacctgggtgacatggacttcaaggtagccgggacgtccgaa
gggattacatccttgcagatggacatcaagattgccgggattacccgtgaaatcatggat
gtggcattgaagcaggcggccggtggccgggcttatatcctggaagaaatgaacagtgcc
ctgagtggcgcccgtgaagaaatgagcgatcacgcgccacggatcgaaaccatccagatc
aaccgcgagaaaatccgcgaagtgatcgggaccggtggtaaagtgatccgcgaaatctgt
gaagtgaccggcgccaaggttgacattgaagacgacgggaccatcaaggtttcctcttcc
gatctgtccgccattgaagcggccctgaaatggatcgaaggcatcgttgcagagcctgaa
gtgggcaaaatttacgaaggtaaagttgttaaaaccgttgatttcggcgctttcgtgaac
ttccttggcagccgtgatggtctggttcacatcagtgaactggaagatcatcgggtgaag
caagtgtccgatgtggtcagtgaaggcgacatcatcaaggtcaaggttcttggcattgat
gaccgcggcaaggttcggttgagccgtcgtgtggtcgaccaggaaactggcgaagatctc
caaaacaaagaaggggacgaggaataa
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