Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_0063
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Entry
ECRM13516_0063 CDS
T03011
Symbol
hepA
Name
(GenBank) RNA polymerase associated protein RapA/HepA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecoh03021
]
ECRM13516_0063 (hepA)
Transcription machinery [BR:
ecoh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ECRM13516_0063 (hepA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHG12759
LinkDB
All DBs
Position
complement(67766..70672)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDSARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgcctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcgcgtaagtattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagcctgatcccgcaccagctcaac
atcgctcatgatgttggccgccgccacgcgccgcgcgtcctgctggctgacgaagtgggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtgctgattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgcgctgtttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccattcgacaccgaacagctggtgatttgctcgctggattttgcccgt
cgtagcaaacagcgcctggaacatctctgtgaagccgaatgggacctgctggtggtcgat
gaagcgcatcacctggtgtggagcgaagatgcgccaagccgtgaatatcaggccattgaa
caactggcagagcacgtgccgggcgttctgctgctgaccgcgaccccggaacaactgggg
atggaaagccacttcgcccgtctgcgtctgctggacccgaaccgtttccacgattttgcg
cagttcgttgaagagcagaaaaattatcgtcctgttgcggacgccgttgccatgctgctg
gcaggtaacaaactgagcaatgacgaactgaacatgcttggcgagatgatcggcgagcag
gatatcgagccgctgttgcaggcagcaaacagcgacagcgaagatgcccagagcgcccgt
caggagctggtttcgatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acccgtaacggtgtgaaaggcttcccgaaacgcgagctgcacaccattaagctgccgctg
ccgacgcagtatcagacggctattaaagtctccggcattatgggcgcacgtaaaagtgcg
gaagatcgtgctcgcgatatgctctacccggagcgtatttatcaggaatttgaaggtgat
aacgccacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctgaccagc
catcgctctcagaaagtgctggtgatctgcgctaaagctgccactgcgctgcaactggag
caagtactgcgcgaacgtgaaggtatccgcgcagctgtgttccacgaaggcatgtcgatt
attgagcgtgaccgcgctgccgcctggtttgctgaagaagacaccggcgcacaggtactg
ctgtgctcggaaatcggttctgaaggacgtaacttccagttcgccagccacatggtgatg
tttgacctgccattcaacccggatctgctggagcagcgtattggtcgtctggatcgtatc
ggtcaggcgcacgatattcagatccatgtgccttatctggaaaaaactgctcagtcggtg
ctggtgcgctggtaccacgaaggtctggatgctttcgagcatacctgcccgaccggacgc
actatttacgatagcgtctacaacgatctgattaactatctggcttcaccggatcaaacc
gaaggctttgacgatctgatcaaaaactgccgcgagcaacatgaagcgctgaaagcacag
ctggaacagggtcgtgaccgcctgctggaaatccattccaacggtggcgaaaaagcccag
gcactggcagaaagcattgaagagcaggatgacgataccaacctgattgccttcgccatg
aatctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
accccgtccgatcatatgctggtgccggacttccctggcttgtcggaagatggcatcacc
atcaccttcgaccgtgaagtggcgctggcgcgtgaagatgcgcagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgatactggtagcagcacg
atttcactgttgaaaaacaaagcgttaccggtaggtacgctgttggtggaactgatttac
gtggtcgaagcccaggcgccgaagcagttgcagctcaaccgcttcctgccaccgacaccg
gtacgtatgctgctggataaaaatggcaacaacctggcggcccaggtggagtttgaaacc
tttaaccgccagcttaacgcggtcaaccgtcacaccggcagcaaactggttaatgccgtg
cagcaggatgttcacgctatccttcagctgggtgaagcgcagatcgagaaatcggcccgt
gcattgattgatagcgcacgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagcgctgcgcgcagtgaacccgaacattcgtgacgacgaactgactgccattgag
agcaaccgtcagcaggtaatggaaagcctggatcaggcaggctggcgtctggatgccctg
cgtttgatcgttgtgacgcatcagtaa
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