Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_0404
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Entry
ECRM13516_0404 CDS
T03011
Symbol
ispA
Name
(GenBank) Geranyltranstransferase (farnesyldiphosphate synthase)
KO
K00795
farnesyl diphosphate synthase [EC:
2.5.1.1
2.5.1.10
]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh00900
Terpenoid backbone biosynthesis
ecoh01100
Metabolic pathways
ecoh01110
Biosynthesis of secondary metabolites
Module
ecoh_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
ECRM13516_0404 (ispA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
ecoh01006
]
ECRM13516_0404 (ispA)
Enzymes [BR:
ecoh01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
ECRM13516_0404 (ispA)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
ECRM13516_0404 (ispA)
Prenyltransferases [BR:
ecoh01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
ECRM13516_0404 (ispA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
UbiA
Arm-DNA-bind_3
Motif
Other DBs
NCBI-ProteinID:
AHG13092
LinkDB
All DBs
Position
complement(429692..430591)
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AA seq
299 aa
AA seq
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MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFG
VSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTL
AFSILSDADMPEVSDRNRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRH
KTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG
ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggactttccgcagcaactcgaagcctgcgttaagcaggccaaccaggcgctgagccgt
tttatcgctccactgccctttcagaacactcccgtggtcgaaaccatgcagtatggcgca
ttattaggtggtaagcgcctgcgacctttcctggtttatgccaccggtcatatgtttggc
gttagcacaaacacgctggacgcacccgctgccgccgtagagtgtatccacgcttactca
ttaattcatgatgatttaccggcgatggatgatgacgatctgcgtcgcggtttgccgacc
tgccatgtgaagtttggcgaagcaaacgcgattctcgctggtgacgctttacaaacgttg
gcgttctcgattttaagcgatgccgatatgccggaagtgtcggaccgcaacagaatttcg
atgatttcagaactggcaagcgctagtggtattgccggaatgtgcggtggtcaggcatta
gatttagacgcggaaggcaaacacgtacctctggacgcgcttgagcgtattcatcgtcat
aaaaccggcgcattgattcgcgccgccgttcgccttggtgcattaagcgccggagataaa
ggacgtcgtgctctgccagtactcgacaagtatgcagagagcatcggccttgccttccag
gttcaggatgacatcctggatgtggtgggagatactgcaacgttgggaaaacgccagggt
gccgaccagcaacttggtaaaagtacctaccctgcacttctgggtcttgagcaagcccgg
aagaaagcccgggatctgatcgacgatgcccgtcagtcgctgaaacaactggctgaacag
tcactcgatacctcggcactggaagcgctagcggactacatcatccagcgtaataaataa
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