Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_0915
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Entry
ECRM13516_0915 CDS
T03011
Symbol
ybjD
Name
(GenBank) putative ATP-dependent endonuclease of the OLD family
KO
K07459
putative ATP-dependent endonuclease of the OLD family
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99976 Replication and repair
ECRM13516_0915 (ybjD)
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Gene cluster
GFIT
Motif
Pfam:
DUF2813
OLD-like_TOPRIM
AAA_15
AAA_21
AAA_29
ABC_tran
AAA_23
SMC_N
Amidohydro_3
DUF3801
Motif
Other DBs
NCBI-ProteinID:
AHG13589
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Position
949719..951377
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AA seq
552 aa
AA seq
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MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDF
WFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAE
DGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVE
VTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNE
QRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLH
PIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTED
SRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLK
PLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQ
GFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMF
SRVLWLARGRAD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgattcttgagcgcgttgaaattgtgggttttcgcggtatcaaccgtttgtcgttgatg
ctggaacaaaacaacgtcctgattggggagaacgcgtggggtaaatccagcttgctggac
gccttaaccctgctgctatcgccagaatcagatctctaccattttgagcgcgacgatttc
tggttcccgccgggagatatcaacgggcgagaacatcatctgcatattattttgaccttc
cgcgaatcgctgccaggccgacatcgggttcgccgttatcggccgctggaagcgtgctgg
acgccatgcaccgatggctatcaccgtattttttatcgtctggaaggggagagtgcggaa
gacggcagcgtgatgacactgcgcagttttctcgataaagacggacatccgattgatgtt
gaggatattaacgatcaggcacgccatctggtgcgtttaatgccggtgctgcgcttgcgt
gatgcccgttttatgcgccgtattcgtaacggcacggtgccaaatgtccctaatgtggaa
gtcaccgcgcgccagctcgatttcctcgcccgtgagttgtcctcacatccgcaaaatctc
tctgatggacagattcgtcagggactttccgcaatggtgcagctgcttgagcattatttc
tctgagcagggggctggacaggcgcgatatcgtttaatgcggcggcgggccagcaatgag
caacgaagctggcgctatctggacatcatcaaccggatgattgaccgacctggagggcgc
tcgtatcgggttattttgctcggcctgtttgctactttattgcaggcaaaaggcacattg
cgactggataaagacgcccgtccattgttgctgatcgaagatccagaaacgcgtttacac
cccattatgctttcagttgcctggcatctgttgaatcttttgcctttacaacgtattgct
accaccaactctggcgagctgctttcgttaactccagtggaacatgtttgccgcctggtg
cgtgaatcttctcgtgttgccgcctggcgtctggggccaagtggcttgagcaccgaagac
agccgccgcatctcttttcacattcgttttaatcgtccgtcatcgctgtttgctcgctgc
tggttgctggtggaaggggaaacggaaacctgggttatcaatgaactggcgcgtcagtgc
ggacatcattttgatgccgaagggatcaaggtcattgagtttgcccagtccgggctaaag
ccactggttaaatttgcccgccgaatggggattgaatggcatgtgctggtcgatggcgat
gaagcagggaagaaatatgccgctacggtacgcagcctgttgaataatgatcgggaagcc
gaacgagaacatttaacggcgttaccggcgctggatatggaacattttatgtatcgccag
ggattttccgatgtgttccaccgcgtggcgcaaatcccggaaaatgtaccgatgaatctg
cgcaaaattatctcgaaagcgatccatcgctcttccaaacccgatcttgccattgaagtg
gcaatggaggccggacgtcgtggtgtggactccgtaccgacgctgctgaaaaaaatgttc
tcacgcgtgctgtggctggcgcgcggtcgcgcggattaa
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