Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_1465
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Entry
ECRM13516_1465 CDS
T03011
Symbol
ymfC
Name
(GenBank) 16S rRNA uridine-516 pseudouridylate synthase
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecoh03009
]
ECRM13516_1465 (ymfC)
Enzymes [BR:
ecoh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
ECRM13516_1465 (ymfC)
Ribosome biogenesis [BR:
ecoh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ECRM13516_1465 (ymfC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_2
DUF8729
Cyc-maltodext_C
Motif
Other DBs
NCBI-ProteinID:
AHG14136
LinkDB
All DBs
Position
complement(1455977..1456510)
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AA seq
177 aa
AA seq
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MILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ
PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREVTD
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctgttcaataaaccctacgatgttcttccgcagttcaccgatgaagccggacgc
aaaacattaaaagaattcatcccggttcagggcgtttatgcagcaggtcgtcttgacaga
gatagcgaagggttattggtgctgaccaataatggtgcactacaggcgcgtttaacccag
ccaggcaaacgcactggaaaaatctattatgtgcaggtggaaggcattcccacacaagac
gcacttgaagccttgcgcaatggcgtaaccttaaatgatggccctaccctgcccgccggc
gcggagctggttgacgaacccgcgtggttatggccgcggaatccaccaattcgtgaacgc
aaaagtattcccaccagctggctgaagatcaccttatatgaaggacgtaatcgccaggtg
cgccgcatgaccgcccatgttggtttccccacgctgcgactgattcgttatgcgatgggt
gattacactttggataatcttgctaatggcgaatggcgagaagtgacagattaa
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integrated database retrieval system
