Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_3365
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Entry
ECRM13516_3365 CDS
T03011
Symbol
gapD
Name
(GenBank) Succinate-semialdehyde dehydrogenase [NADP+]
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Pathway
ecoh00250
Alanine, aspartate and glutamate metabolism
ecoh00310
Lysine degradation
ecoh00350
Tyrosine metabolism
ecoh00650
Butanoate metabolism
ecoh00760
Nicotinate and nicotinamide metabolism
ecoh01100
Metabolic pathways
ecoh01120
Microbial metabolism in diverse environments
Module
ecoh_M00027
GABA (gamma-Aminobutyrate) shunt
ecoh_M00956
Lysine degradation, bacteria, L-lysine => succinate
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
ECRM13516_3365 (gapD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
ECRM13516_3365 (gapD)
00310 Lysine degradation
ECRM13516_3365 (gapD)
00350 Tyrosine metabolism
ECRM13516_3365 (gapD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
ECRM13516_3365 (gapD)
Enzymes [BR:
ecoh01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
ECRM13516_3365 (gapD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
ECRM13516_3365 (gapD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
ECRM13516_3365 (gapD)
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Gene cluster
GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AHG16005
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All DBs
Position
3336651..3338099
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AA seq
482 aa
AA seq
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MKLNDSNLFRQQALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRA
LPAWRALTAKERANILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFA
EEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLK
PASQTPFSALALAELASRAGIPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQ
LMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDG
VYDRFAEKLQQAVSKLHIGDGLDKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKA
HERGGNFFQPTILVNVPANAKVSKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYA
RDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMCI
GL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttaacgacagtaacttattccgccagcaggcgttgattaacggggaatggctg
gacgccaacaatggcgaggtcatcgacgtcaccaatccggcgaacggcgacaagctgggt
agcgtacccaaaatgggcgctgatgaaacccgcgctgctatcgacgccgccaaccgcgcc
ctgcccgcctggcgtgcgctcaccgccaaagagcgcgccaacattctgcgcaactggttc
aatttgatgatggagcatcaggacgatttagcgcgcctgatgaccctcgaacagggcaaa
ccactggcagaagcgaaaggcgaaatcagctacgccgcctcctttattgagtggtttgcc
gaagaaggcaaacgtatttatggcgacaccattcccggtcatcaggccgataaacgcctg
attgttatcaagcagccgattggcgtcaccgcggctatcacgccgtggaacttcccggcg
gcgatgattacccgtaaagccggcccggcgctggcggcaggctgcaccatggtgctgaag
cccgccagtcaaacgccgttctctgcgctggcgctggcggagctggcgagccgcgcgggc
attccggctggcgtgtttaacgtggtcaccggttcggcgggcgcggtgggtaacgaactg
accagcaacccgctggtacgcaaactgtcgtttaccggttcgaccgaaattggccgccag
ttaatggaacagtgcgcgaaagacatcaaaaaagtgtcgctggagctgggcggcaacgcg
ccgtttatcgtctttgacgatgccgatctcgataaagccgtggaaggcgcactggcctcg
aaattccgcaacgccgggcaaacctgcgtctgcgccaaccgtttatacgtgcaggacggc
gtgtatgaccgctttgccgaaaaattgcagcaggcggtaagcaaactgcacatcggcgac
gggctggataaaggcgtcaccatcgggccgctgatcgatgaaaaagcggtagcaaaagtg
gaagagcatattgccgatgcgctggagaaaggcgcgcgcgtggtttgcggcggtaaagca
catgaacgtggcggtaacttcttccagccgaccattctggtgaacgttccggctaacgcc
aaagtgtcgaaagaagagaccttcggccccctcgccccactgttccgttttaaagatgaa
gccgatgtgattgcgcaggccaatgacaccgagtttggccttgccgcctatttctacgcc
cgtgatttaagtcgcgtcttccgcgtgggcgaggcgctggagtatggcatcgtcggcatc
aataccgggattatttccaatgaagtggccccgttcggcggcatcaaagcctcgggtctg
ggtcgtgaaggttcgaagtatggcatcgaagattacttagaaatcaaatatatgtgcatc
ggtctttaa
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