KEGG   Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_3482
Entry
ECRM13516_3482    CDS       T03011                                 
Symbol
ygbB
Name
(GenBank) CRISPR-associated helicase Cas3, protein
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
ecoh  Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:ecoh00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ecoh02048]
    ECRM13516_3482 (ygbB)
Enzymes [BR:ecoh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ECRM13516_3482 (ygbB)
Prokaryotic defense system [BR:ecoh02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    ECRM13516_3482 (ygbB)
SSDB
Motif
Pfam: Cas3_HD Cas3-like_C_2 DEAD ResIII Helicase_C AAA_30 PhoH AAA_19 T2SSE UvrD-helicase TUSC2
Other DBs
NCBI-ProteinID: AHG16116
LinkDB
Position
complement(3432505..3435171)
AA seq 888 aa
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK
QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY
WFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL
ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTDTF
LFKEDAPSGIQAVRTYFQDRQQDACRVLALSGLVSNKRRYDGVHALLDNGYQPRQLQVLV
DALPTAPGLTVIEAPTGSGKTETALAYAWKLIDQQLAESVIFALPTQATANAMLSRMEAN
ASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIG
VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI
LLSATLPMKQKQKVLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI
QPEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQLCFQRLKELNDTQVDIDLF
HARFTLNDRREKENRVISNFGKNGERNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF
QRLGRLHRHHRKYRPAGFEIPLATVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS
LFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKFESAECEKRFKARKVLQWAEEYSLQDND
ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS
FSEVVDEDGLLWLEGKQNQDGWFWQGNSIVITYTGDEGMTRVIPANPK
NT seq 2667 nt   +upstreamnt  +downstreamnt
atggaaccttttaaatatatatgccattactggggaaaatcctcaaaaagcctgacgaaa
ggaaatgatattcatctgttaatttatcattgccttgatgttgctgctgttgcagattgc
tggtgggatcaatcagtcgtactgcaaaatactttttgccgaaatgaaatgctatcaaaa
cagagggtgaaggcctggctgttatttttcattgctcttcatgatattggaaagtttgat
atacgattccaatataaatcagcagaaagttggctgaaattaaatcctgcaacgccatca
cttaatggtccatcaacacaaatgtgccgtaaatttaatcatggtgcagccggtctgtat
tggtttaaccaagattcactttcagagcaatctcccggggattttttcagtttttttgat
gcagctcctcatccttatgagtcctggtttccatgggtagaggccgttacaggacatcat
ggttttatattacattcccaggatcaagataagtcgcgttgggaaatgccagcttctttg
gcatcttatgctgcgcaagataaacaggctcgtgaggagtggatatctgtactcgaagca
ttatttttaacgccagccgggttatctataaacgatataccacctgattgttcatcactg
ttagcaggtttttgctcgcttgctgactggttaggttcctggaccacaacggataccttt
ctattcaaagaagatgcaccttcaggaatacaagcggtaagaacatattttcaggataga
cagcaggatgcgtgtcgggtactggcgctgagtggccttgtatcaaataagcgtcgttat
gacggcgtacatgccttactggacaatggctatcaaccaagacaattacaggtgttggtc
gatgctcttcctacagctcccgggctgacggtgattgaggcacctacgggatcaggtaaa
accgaaacagcgctggcctatgcctggaaacttattgaccaacaacttgcggagagtgtt
atttttgccctccctacacaagctactgcaaatgcaatgctcagcagaatggaagcgaac
gcgagccgtttatttacctccccaaatcttattcttgctcatggtaattcacgttttaac
cacctttttcaatcaataaaatcacgcgcatttactgagcaggggcaagaagaagcgtgg
gttcagtgttgtcagtggttgtcacaaagcaataagaaagtgtttcttgggcaaatcggc
gtttgcactattgatcaggtgttgatatcggtattgccagttaaacaccgctttatccgt
ggtttgggaattggtcgaagtgttttaattgttgatgaagttcatgcttacgacacctat
atgaacggcttgctggaggcagtgctcaaggctcaggctgatgtgggagggagtgttatt
cttctttccgcaaccctaccaatgaaacaaaaacagaaagttctggatacttatggtctg
catacagatccagtggaaaataactccgcatatccacttattaactggcgaggtgtgaat
ggtgcgcaacgttttgatctgctagctcatccagaacaactcccgccccgcttttcgatt
cagccagaacctatttatttagctgacatgttacctgaccttacgatgttagagcgaatg
atcgcagcggcaaacgcgggtgcacaagtctgcctcatttgcaatttggttgacgttgca
caactatgcttccaacggctaaaggaactaaatgacacgcaagtagatatagatttgttt
catgcgcgctttacgctgaacgatcgtcgtgaaaaagagaatcgtgtcattagcaatttc
ggaaaaaatggggagcgaaatgttggacgaatacttgtcgccacccaggtcgtggaacaa
tcgctcgatgtagattttgattggttaattacccagcattgtcccgctgatttgcttttc
caacgattaggccgtttacatcgccatcatcgtaaatatcgtcccgccggttttgagatt
cctctggcaaccgttttgctgcctgatggcgaaggttacggacgacatgagcatatttat
agcaacgttagagtcatgtggcggacgcagcaacatattgaggaacttaatggagcatcc
ttatttttccctgatgcctaccggcaatggctggatagcatttacgatgatgctgaaatg
gatgagccagaatgggtcatcaaaggcatggataagtttgaaagcgctgagtgtgaaaag
aggttcaaggctcgcaaggttctgcagtgggctgaagaatatagtttgcaggataacgat
gaaaccattcttgcggtaacgagggatggggaaatgagcctgccattattgccttatgta
caaacgtcttcaggtaaacaactgctcgatggccaggtctacgaggacctaagtcatgaa
cagcagtatgaggcgcttgcacttaatcgcgtcaatgtacccttcacctggaaacgtagt
ttttctgaagtagtagatgaagatgggttactttggctggaagggaaacagaatcaggat
ggatggttctggcagggtaacagtattgttattacctatacaggggatgaagggatgacc
agagtcatccctgcaaatcccaaataa

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