Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_4168
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Entry
ECRM13516_4168 CDS
T03011
Symbol
rtcR
Name
(GenBank) Transcriptional regulatory protein RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecoh03000
]
ECRM13516_4168 (rtcR)
Transcription factors [BR:
ecoh03000
]
Prokaryotic type
Other transcription factors
Others
ECRM13516_4168 (rtcR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
AAA_5
AAA_lid_14
AAA
Mg_chelatase
NACHT
AAA_16
AAA_22
AAA_30
AAA_19
AAA_33
AAA_14
AAA_2
AAA_7
T2SSE
ATPase_2
TsaE
NB-ARC
ResIII
MCM
Motif
Other DBs
NCBI-ProteinID:
AHG16786
LinkDB
All DBs
Position
4112244..4113842
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AA seq
532 aa
AA seq
DB search
MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK
RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ
ICWFLLAEARYLPARLIQSSPPRKKEQPRGAGEVTIIDLDLSRYNAIASRFAEERQQTLD
FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFGG
AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG
LRQRQEDIEPNLDYEVERHAALTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT
RMATFATSGRITLEVVEDEINRLRYNWQESRPSALTQLLGAEAENIDLFDRMQLEHVIAI
CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaacagtggcttttggctttgtcggaacggtgctggattatgccgggcgcggc
agtcagcgctggtcgaaatggcgtccgacgctttgtttatgccagcaagaatcgttggtc
atcgatcgactggaattgttgcatgacgcccgctcgcgctcgctgtttgaaacgcttaaa
cgcgatatcgccagcgtttctccagaaacagaagtggtgagcgttgagattgaactgcat
aacccgtgggatttcgaagaggtttacgcctgcctgcatgatttcgcccgtggttacgag
tttcagccagaaaaagaagactatttaattcacatcaccaccggcacccacgtcgcgcag
atttgctggtttctgctggcggaagcgcgttacctgcccgcccggttgatacaatcttca
cctccgcgcaaaaaagaacagccgcgcggcgcaggtgaagtgacgattatcgatctcgat
ttaagccgttataacgccatcgccagccgctttgccgaggaacgccagcaaacgcttgat
tttcttaaatccggcattgccacgcgtaacccgcacttcaaccgcatgattgaacagatc
gaaaaagtggcgattaaatcccgcgcaccgatcctgctaaacggcccaaccggtgcgggc
aagtcatttctggcgcgacgtatatttgaattaaaacaggcgcggcatcagtttggcggc
gcgtttgtggaagtgaactgcgcaaccctgcgcggcgataccgccatgtcgacgctgttt
ggtcatgtgaaaggcgcgtttaccggagcgcgggaatctcgtgaaggattattacgcagc
gccaacggcggaatgttgtttcttgatgagattggcgaactgggcgcagacgaacaggca
atgctgcttaaagccattgaagaaaaaaccttttatccgtttggcagcgatcgccaggtg
agcagtgattttcagcttatcgccggaacggtgcgtgatttgcgccagctggttgccgaa
ggaaaatttcgcgaagacctgtacgcgcggatcaatctctggaccttcaccctgccgggg
ctacgccagcgccaggaagatattgaacctaacctggattatgaagtggagcgtcacgcc
gcgcttaccggcgacagcgtgcgttttaacaccgaagcgcggcgcgcctggctggccttt
gcgacatctccccaggcaacatggcgcggtaactttcgcgaactttctgccagcgtcacg
cggatggcgacgtttgccacgagcggacgcattactctggaagtggttgaagatgagata
aaccgtctgcgctataactggcaggagagccgcccctccgcgcttacgcagctactgggc
gcagaggcagaaaacatcgatctcttcgaccgtatgcaactggaacacgttatcgcaatc
tgccgccaggcaaagtcgctttccgcagccggacgccagctttttgacgtttcgcgccag
ggcaaagccagcgtcaatgacgcggatcggctacgcaaatacctggcgcgttttggtctg
acgtgggaagccgtgcaggatcagcacagctccagttga
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