Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_5077
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Entry
ECRM13516_5077 CDS
T03011
Symbol
rapA
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecoh03021
]
ECRM13516_5077 (rapA)
Transcription machinery [BR:
ecoh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
ECRM13516_5077 (rapA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ResIII
DEAD
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AHG17663
LinkDB
All DBs
Position
complement(5051937..5054843)
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AA seq
968 aa
AA seq
DB search
MAETVSLTPAKLYEESTVFFRSPESGLWCRGRYGGQRPDNKHLVIVRSDKNVVIDLADIF
YPNYGQGLAMNPAHFLAARANDAPFFYPLREKFVSAWIKQRAACRSMSSLISSRVEIEPH
QIAIVRRILQDQNPKYLLADEVGLGKTIEAGLVIREHILECKREARVLVVVPQVLQGQWT
QELVDRFALQEVMSGGRHTQIRLCLPEELCQPELIGWKPTMVVIDEAHQLTRQAWADDED
DLAQYAAMAALCHQARIVLLLSGTPMHGNERHFLAMLHCINPQAWQLNAQGIEKFMQRVA
ERERLGGIYSSLTPETPNGVLEEILEELRLLFADDEQLQARIVGLSPLVDFFAPDESEER
TAGILALRQWIGERYRLFHRLLRNRREDPALEYLFPGLAGLEKCVWPVASTEITLDETLD
AWRAAAWRNPAQHQHLDSTTLDEWVEALFLNPLVMSRQAKKALVKGTASEEEFNFLEQII
ETSQQEQKAKDVALMKALTDWFEKCPDGKAVIFCGEGSEAAFLFTKLQIQAPWAVVRHAP
DQRKQSELLDDSWQVLICDRRGEDGLNLHGNNRLAVHYSLSRDFNRFEQRLGRFNRYSGN
LRGVKPVKSLVLLPERDGLRADWVKLLDEGTGLFHRSVASLQFVLSEQLDVVWRDYVGQG
LAVFHEAQQRFSGENGFIAQERKRVLAQENLLSMEQEVIAAREFSEQLAESEDDAEEQAK
DMLAWMCKALGFKREKYPEGGFRLRFERGEYQRQTLVDVGTFIDNCLLGLDFSEGYPPST
AMMSLSRTEAGNHKHVYPLRYGQPFVETVWQLMQSDPRGASMALLRVLSSAVALKQPHTW
FHFQWLSEAQVEGENQLAAQRRGDECFSPVVHNFWLDDGGKEADPQIVVSLLDKPYDEEG
NRLFQDINLREEVWTRMPDWFDPHSWKETVLAAAEQARQNVHAHYGDRPVRHQLLAMKAI
ILCTRDML
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaccgtatcactgacgccggcaaaactgtatgaagagagcacggtattcttc
cgctcacccgagagcggactgtggtgtcgggggcgttatggcgggcaacgtccggataat
aagcatctggtgatcgtccgctctgataagaacgtcgtcatcgatctagctgatattttt
tatccaaactacggacagggactggcaatgaacccggcccatttcctcgccgctcgcgcc
aacgacgcaccttttttctacccactgcgcgagaagtttgtaagtgcatggatcaaacag
cgcgccgcctgtcggtcaatgtcgtcgttaatcagcagtcgggtggagattgagcctcat
cagatagcgattgtccgccgcattctccaggatcagaaccccaaatacctgctagcggac
gaagtaggactgggcaaaaccatcgaagcgggactggtcatccgagagcatattctggag
tgtaaacgtgaagcccgcgtattggtggtggtgcctcaggtattgcaaggccaatggacg
caggaactggtcgatcgttttgcgctacaggaagtgatgagcggaggacgacacacccag
attcgtctgtgccttccggaagaactttgccagccggaactgatcggctggaagcccacg
atggtggtgatcgacgaggcccatcaactgactcgacaggcatgggccgatgatgaagat
gacctggcgcagtatgccgctatggccgcgttgtgccatcaggcccgtattgtgctgctc
ctgtctggcacaccgatgcacggtaacgagcgtcacttcctggcaatgctgcactgcata
aatccacaggcgtggcagcttaatgcacagggaatcgaaaaatttatgcaacgcgtggca
gagcgcgagcgtctggggggaatttacagctctctgacccctgaaacaccaaacggggtg
ctggaagagatcctcgaagagttacgtctgctttttgctgatgatgagcaactccaggcg
cgcattgttggtctgagtccgttggttgatttttttgcacctgatgaaagcgaagagcga
acggcgggcattttggcattacgacagtggataggagagcgctaccgtctttttcaccgc
ttgctgcgtaaccgacgtgaagatcccgcgctggaatacctatttccaggtctggccggg
ttggaaaaatgtgtctggcccgtcgcatcgaccgagatcacgcttgatgaaacccttgat
gcctggcgtgccgcggcctggcgcaaccccgcacagcatcaacatctggattccacaacg
cttgatgaatgggtggaagcgctgtttctcaacccgctggtgatgtcccgccaagccaaa
aaggcactggtaaaagggaccgccagcgaagaagagttcaattttcttgagcagattatt
gaaacgtcccagcaggagcagaaagccaaagatgtggcgctaatgaaggcgctgaccgac
tggtttgaaaaatgtcctgatggcaaagcagtcatcttttgcggtgaaggatcagaagcc
gccttcctgtttaccaaactgcaaattcaggccccctgggcggtagttcgccatgcgccg
gaccagcgtaagcagagcgagttgttggatgacagttggcaggtattgatctgcgatagg
cgcggcgaagacggactgaatctgcacggaaacaaccggcttgcggtccactatagtctg
agccgcgactttaatcgctttgaacagcggttggggcgctttaaccgctattccggaaat
ctacgcggcgttaagccagtgaaaagcctagttttactgcctgagcgtgatgggctgcgt
gctgactgggtgaaattactggacgaaggcacgggattgtttcatcgaagcgtcgccagc
ctgcaatttgttctgtctgaacaattagacgtggtatggcgcgattacgttgggcagggg
cttgccgtcttccatgaggcgcaacagcgcttttcgggagaaaatggcttcatcgctcag
gagcgtaagcgcgttctggctcaagaaaacttgttatcgatggaacaggaggtcattgct
gcccgcgagttttctgagcaactggccgaatctgaagatgatgccgaagagcaggcaaag
gatatgctggcttggatgtgcaaggcattagggtttaagcgagaaaaatatcctgaaggc
ggatttcgcctgcgcttcgagcgtggcgaatatcaacggcaaacgctggtggacgtggga
acttttattgataactgcctgctcggtctggatttttcagagggatatccaccctccacg
gcgatgatgagcctgtctcgtacggaagccggcaaccataaacatgtttaccccttgcgc
tacgggcagcctttcgtcgaaaccgtatggcaactgatgcagagcgatccgcgaggtgcc
agtatggcgctgcttcgggttctctcctccgcggttgcgctgaagcaaccccacacctgg
ttccattttcagtggctgagtgaagcacaggttgaaggtgaaaatcagctagccgcgcag
cgtcgtggtgatgagtgcttcagcccagtggtccacaatttctggctggatgacggtgga
aaagaggctgacccgcagatcgtcgtctccctgctggataaaccttacgatgaagagggc
aaccgtttgttccaggatatcaatctgcgagaagaggtctggacgcgaatgccggactgg
tttgatccgcatagctggaaagagaccgtactcgctgcggcggagcaggcccggcagaac
gtgcatgctcactatggtgatcggcccgtccgccatcaattgcttgcaatgaaggcgatt
attctgtgtacccgtgacatgctgtaa
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