Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_5106
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Entry
ECRM13516_5106 CDS
T03011
Symbol
treR
Name
(GenBank) Trehalose operon transcriptional repressor
KO
K03485
LacI family transcriptional regulator, trehalose operon repressor
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecoh03000
]
ECRM13516_5106 (treR)
Transcription factors [BR:
ecoh03000
]
Prokaryotic type
Helix-turn-helix
LacI family
ECRM13516_5106 (treR)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LacI
Peripla_BP_3
Peripla_BP_1
HTH_3
HTH_23
HTH_31
HTH_IclR
HTH_7
MarR_2
HTH_Tnp_ISL3
HTH_28
AAA_18
HTH_Crp_2
HTH_26
CENP-B_N
MarR
TrmB
HHH
Peripla_BP_4
HTH_AraC
HTH_17
Motif
Other DBs
NCBI-ProteinID:
AHG17691
LinkDB
All DBs
Position
5084677..5085624
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AA seq
315 aa
AA seq
DB search
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSPSRSARAMRGQ
SDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSSQLVAEHLGILKRRNID
GVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYDQGHRNISY
LGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCAT
DTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVT
GRSEPQQIIIPATLS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatcggctgaccatcaaagacatcgcgcgcttaagcggcgtggggaaatctacg
gtttcccgggtgctgaataacgaaagcggcgtgagccagcgcacgcgcgagcgcgtggaa
gcagtgatgaatcagcatggattttccccttcccgctctgcgcgcgctatgcgtgggcaa
agcgataaagtggtcgccatcattgttacccgcctggattcgttgtcagaaaatctcgcc
gttcaaaccatgctgccagcgttctatgaacaaggttacgacccaatcatgatggaaagt
cagttttcctcgcaattagttgccgaacatttggggatcctaaaacggcgtaatatcgac
ggcgtagtgctgttcggttttaccggcataacagaagaaatgttagcccactggcagtca
tcgctggttctgctggcgcgtgacgcaaaaggctttgcttcggtctgttatgacgacgaa
ggggcaatcaagatcctgatgcaacggctctatgaccaggggcatcgtaatatcagttat
ctcggcgtgccgcacagtgacgtgacgaccggtaagcgacgtcacgaagcctacctggcg
ttctgcaaagcgcataaactgcatcccgttgccgctctgccagggcttgctatgaagcaa
ggctatgagaacgtagcaaaagtgattacgcctgaaactaccgccttactgtgcgcaacc
gacacgctggcacttggcgcaagtaaatacctgcaagagcaacgcatcgacaccttgcaa
ctggcgagcgtcggtaatacgccgttaatgaaattccttcatccggagatcgtcaccgta
gatcctggttacgccgaagctggacgccaggcggcctgccaattgatcgcacaggtaacc
gggcgcagcgaaccgcaacaaatcatcatccccgccaccctgtcctga
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