Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_01178
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Entry
ECOPMV1_01178 CDS
T02847
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Pathway
ecoi03030
DNA replication
ecoi03430
Mismatch repair
ecoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ECOPMV1_01178 (holB)
03430 Mismatch repair
ECOPMV1_01178 (holB)
03440 Homologous recombination
ECOPMV1_01178 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecoi03032
]
ECOPMV1_01178 (holB)
03400 DNA repair and recombination proteins [BR:
ecoi03400
]
ECOPMV1_01178 (holB)
Enzymes [BR:
ecoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ECOPMV1_01178 (holB)
DNA replication proteins [BR:
ecoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ECOPMV1_01178 (holB)
DNA repair and recombination proteins [BR:
ecoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ECOPMV1_01178 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
HolB_lid
EPF
Motif
Other DBs
NCBI-ProteinID:
CDH64645
LinkDB
All DBs
Position
1210262..1211266
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AA seq
334 aa
AA seq
DB search
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLTPEKGKNALGIDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQAALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVQSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVVELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggcatgggcgatgatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacacatcccgattactacaccctgact
cccgaaaaagggaaaaatgcgctgggcattgatgcggtacgtgaggtcaccgaaaagctg
aatgagcacgcacgcttaggtggtgcgaaagttgtctgggtaaccgatgctgccttacta
accgacgccgcggctaacgcattgctgaaaacgcttgaagagccaccagcagagacgtgg
tttttccttgctacccgcgagccagaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgccgccggaacagtacgccgtgacctggctttcacgcgaagtg
acaatgtcacaggctgcactacttgccgcattgcgcttaagcgccggttcgcctggggcg
gcactggcgttgtttcagggagataactggcaggctcgtgaaacattgtgtcaggcgctg
gcatatagcgtgcaatcgggcgactggtattcgctgctagcggcccttaatcatgaacaa
gctccggcacgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggcgctgcgcaggtgaccaatgttgatgtgccgggcctggtcgtcgaactggcaaaccat
ctttctccctcgcgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgtcacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgctaccggttcctcatctttaa
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