Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_01193
Help
Entry
ECOPMV1_01193 CDS
T02847
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Pathway
ecoi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ECOPMV1_01193 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecoi03400
]
ECOPMV1_01193 (mfd)
Enzymes [BR:
ecoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ECOPMV1_01193 (mfd)
DNA repair and recombination proteins [BR:
ecoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ECOPMV1_01193 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDH64660
LinkDB
All DBs
Position
complement(1225035..1228529)
Genome browser
AA seq
1164 aa
AA seq
DB search
MPPYVEAYPNENLTTVMPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG
VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT
RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI
ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
TGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL
PTKAANANLGFQKLPDLAIQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR
IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTMRNLALICESDLLGERVARRRQDSRRA
INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS
SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK
HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL
AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI
DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN
MAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQK
AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA
LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV
DLRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA
RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD
LSERKTRIEWVRQFMRELEENAIA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccccatatgttgaggcatatcctaacgagaatctgacaaccgttatgcctgaacaa
tatcgttatacgctgcccgtcaaagcgggtgagcagcgtctgctgggcgagttaactggc
gctgcctgcgcaacgctggtagcggaaattgccgaacgtcacgccggaccagtggtgctt
attgcgccagatatgcaaaatgctctgcgtttgcatgatgaaatcagccagttcaccgat
cagatggtgatgaacctggcggactgggaaaccctcccttacgacagtttttcgcctcat
caggacattatctcctcgcgcctttccaccctttaccagctaccgacgatgcagcgtggc
gtactgattgttccggtgaatacgcttatgcagcgcgtttgcccgcacagttttctccac
ggtcatgcgctggtgatgaaaaaaggtcagcgcctgtcacgagatgcattacgaacccaa
ctggacagcgccggttatcgccatgttgaccaggtgatggagcacggcgaatacgccacg
cgcggcgcgttgctggatctcttcccgatggggagtgagctgccttatcgtcttgatttc
tttgatgatgaaatcgacagcctgcgggtgtttgacgtcgatagccagcgcacgctggag
gaagtagaagcgatcaatctgcttcccgcgcacgaatttccgaccgataaagcggcaatt
gaactgttccgcagccagtggcgtgataccttcgaagtgaagcgcgacccggaacatatt
tatcagcaagtgagtaaaggcacattacctgccgggatcgagtactggcagccgctattc
ttcagcgaaccgctgccgccactgttcagttatttccctgccaatacgctgttggtgaat
actggcgatctggaaaacagtgccgaacgtttccaggctgacacgctggcgcgttttgag
aatcgcggcgtcgacccaatgcgcccactgttgccaccacaatcgctctggctgcgggtg
gatgagctcttttcagagctgaaaaactggccgcgtgtgcagctaaaaactgaacattta
ccgacaaaagcagcgaatgccaatttaggtttccagaaactgccagacctggccattcag
gcacaacaaaaagcgccgctggatgcgctgcgtaagttcctcgagactttcgacggtccg
gtggtgttctcggtagaaagtgaaggtcgccgtgaagcgctgggtgaactgctcgcgcga
attaaaattgctccgcaacgcattatgcgtcttgatgaagccagcgaccgtgggcgttat
ctgatgattggcgctgccgaacatggttttgtcgatacgatgcgtaacctggcgctgatt
tgcgaaagcgatctgctcggtgaacgcgttgcccgtcgtcgtcaggattctcgccgcgcc
atcaaccccgatacactgatccgtaaccttgcggagctgcatattggtcagccggtggtc
catctggagcacggcgtcggtcgttatgccggaatgaccacgctcgaagctggaggcatt
actggcgagtatttgatgctcacctatgccaacgacgccaaactgtatgttccggtgtcg
tcactgcatctgattagccgttacgcgggtggcgcagaagaaaacgcaccactgcataaa
cttggtggcgatgcctggtcacgcgcacggcagaaagcggcggaaaaagtgcgtgatgtg
gcggcggaattgctggatatctacgcgcaacgcgccgccaaagagggcttcgcgtttaaa
cacgatcgtgagcagtatcagttattctgcgacagcttcccgtttgaaaccacgccggat
caggctcaagccattaatgcggtgcttagcgacatgtgtcagccgctggcaatggatcgt
ctggtgtgcggcgatgttggctttggtaaaacagaagtggcgatgcgcgccgctttcctg
gcggtagataaccacaaacaggtggcggtgctggtgcctaccacccttctcgcgcagcag
cattacgacaacttccgcgaccgtttcgccaactggccggtacgtatcgaaatgatctcc
cgtttccgcagcgccaaagagcagacgcaaatccttgcggaagtggcggaagggaaaatc
gatattctgatcggtacgcacaaactgctgcaaagtgacgtcaagtttaaagatttaggc
ctgctgattgtcgatgaagaacaccgcttcggggtgcgtcataaagagcgcattaaagcg
atgcgcgcgaacgtggatattctgacgcttaccgcaacgccgatcccacgtacgctgaat
atggcaatgagcggaatgcgcgatctgtcgattatcgccacgccgcccgcccgtcgtctg
gcagttaaaacctttgtccgtgagtatgacagtctggtggtccgggaggcgatcctgcgt
gaaattttgcgcggaggacaggtttattatctctacaatgatgtggaaaacatccagaaa
gccgccgaacggctggcagaactggtacctgaagcgcggattgccatcggtcacgggcaa
atgcgtgagcgcgaactggaacgggtgatgaatgatttccatcatcaacgtttcaacgtg
ctggtttgtaccaccattatcgaaaccgggatcgacattcctaccgccaacaccattatc
attgaacgcgcggatcacttcggtctggcacagttgcaccagttgcgcggtcgcgtcggg
cgttctcaccaccaggcatatgcatggctactgacgccgcatccaaaagcgatgactacc
gatgcgcaaaaacgtcttgaagcgattgcctcgctggaagatctcggtgcaggttttgcg
ctggcaacgcacgatctggagatccgcggcgcaggtgaactgcttggcgaagaacaaagc
ggctcaatggaaaccatcggtttctcgctgtatatggagttgctggaaaacgccgtcgat
gcgctgaaagccggacgcgagccgtcgctggaagatctcaccagccagcaaacagaagtc
gacctgcggatgccgtcgctattgccagatgatttcatccctgacgtgaacacgcgtctg
tcgttctacaaacgtattgccagcgccaaaacggaaaacgaactggaagagatcaaagtc
gagcttatcgatcgcttcggcctgctaccggatccggcgcgtaccctgctggatattgcc
cgtctgcgccagcaagcgcagaaactggggatcaggaagctggaaggtaatgagaaaggc
ggcgtgatcgaatttgccgagaagaatcacgttaatccggcctggttgattggtttgctg
caaaaacagccgcagcattaccgccttgatggtccgacgcgcctgaagtttattcaggat
ttgagtgagcggaaaacgcgtatcgaatgggtacgccagtttatgcgtgaactggaagag
aacgcgatcgcttga
DBGET
integrated database retrieval system
