Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_02288
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Entry
ECOPMV1_02288 CDS
T02847
Symbol
ycgE_2
Name
(GenBank) HTH-type transcriptional repressor YcgE
KO
K21089
MerR family transcriptional regulator, activator of the csg genes
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Pathway
ecoi02026
Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02026 Biofilm formation - Escherichia coli
ECOPMV1_02288 (ycgE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecoi03000
]
ECOPMV1_02288 (ycgE_2)
Transcription factors [BR:
ecoi03000
]
Prokaryotic type
Helix-turn-helix
MerR family
ECOPMV1_02288 (ycgE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MlrA_C
MlrA_helical
MerR_1
MerR
HTH_17
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
CDH65699
LinkDB
All DBs
Position
2359009..2359740
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AA seq
243 aa
AA seq
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MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNG
VQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHL
FIPLRRRLQCQQATLQALLAILDGVLINYISICLASARKKQGKDALVVGWNIQDTTRLWL
EGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGDNRTSAQQQQLTSWQEQGHDIFP
LGI
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttacacaattggtgaagtggcgttgctttgtgatattaaccctgtcacgtta
cgcgcgtggcagaggcgttacggattgctgaaaccacaacggacagacggcggtcatcgg
ctgttcaacgatgccgatattgaccggatccgcgagatcaaacgctggatcgacaacggc
gtgcaggtcagcaaagtaaaaatgctgctcagtaatgaaaatgttgatgtgcagaacggc
tggcgcgatcagcaagaaacattactgacttacctgcaaagcggcaatctgcatagcctg
cgaacgtggatcaaagagcgcggtcaggattaccccgcccagacactcaccacacatctg
tttattcctctgcgccgacggcttcagtgccaacaagcgactctccaggcgctgctggcg
atcctcgacggcgtactgatcaactacatctctatttgcctggcttcggcgcgcaaaaaa
cagggtaaagatgcactggtggttggctggaatattcaggataccactcgtctgtggctg
gagggctggattgccagtcaacaaggatggcgcattgatgtcctcgcccactcgctcaat
caactacgccctgaactgttcgaaggccgtacattgctggtatggtgcggtgataatcga
acctccgcccaacaacagcaactcaccagttggcaggaacaaggccatgatattttccca
ctcggcatttaa
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