Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_02692
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Entry
ECOPMV1_02692 CDS
T02847
Name
(GenBank) outer membrane protein RatB
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
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Gene cluster
GFIT
Motif
Pfam:
InvE_AD
BIg21
Big_1
NPCBM_assoc
DUF1566
SpaA
Motif
Other DBs
NCBI-ProteinID:
CDH66094
LinkDB
All DBs
Position
complement(2774422..2782473)
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AA seq
2683 aa
AA seq
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MSLTLNKILVLCALLISAMLPGWSWAESAWQDSSDTVGEFNGTVPTADSASIPVYQGSVF
LDPTKTHEVAFTAKPSEFNADVSVSKLLVTNPQDREGDIIATPRWENQTPPAVSLVWADA
ATPDTLLDPQPVADRSFCAQGLAGRSLVAWAQPDPQQTMPLLYLLTSTGYPYESVLMLAD
QKVTLKIAPAQGDLISVSAAGYDESSGAAKMTVGGSITLTVTTKDCVGNVVGNIPFVIKR
KDAENRQGVVNNTAPVKLGTTELTTTATEYRGTTDANGVATVTVTQANGPGVKTPLVASL
AGIAQASETAVIFTVLTSPDVPQATMWGHMPDTLKARDYTFSRPKLAAEVDNEGGTVNDH
NETWSTFTWSGADKHCDILPGMRQFGALATVVPTSVQDVAGWPMQGNFYWSSLAGMSGQH
HAADVSNRSEAQKPDDTTFIVSCVDKEAPDVEPKLVLTPGSYDSTIKAMKVKVGEEASLR
LTITDSKNNDQPLAYYYFSLHLDDGINRKNQTDAAWETHPVQIDGGSNVRKVDAHTYEGI
TDANGEATLTLTQPGGVGVKTHITARMRSDFTASDEKDVIFTVITSPDTDKARMWGHMLG
IIEANNIFKRPRLADETDNEQGSVRENNEDWALFDQNSSMQAECGLGHIPSQSSLHSLFA
AHPANAIGTEYGWPTLQKAYLSAVEETSHASVNLATGNIDTYSGFKQNYLSCSGNEMVAQ
IAATTDRDVSAGSRAQAKVGDTITMTVRTFNALNNAPVPYTAFTITKDMGKNRQGQTTGF
DDPTRGAIEMNGTLYGTSQPSLVYAGTTDAQGFATVEIKQSQGVGLSTPLNIVPVNSYIP
NTVNYNVIFTTLTSPDAVGAQMWGHMDETITVDALTFARPRLAAEVFSPDGTLTENNEVW
SRVSQANASSTSKGGCGANMLPRRSQLSALYDANNGDGVQTVHGWPTQRQPYWSSSPADQ
VPHYYTIALNDGARTVGGSTAVYVSCLTTANNPASSITLEVVDPAQWNAAANAAKLKKGE
TLQVKVTVKDAQGNPLGDIPFTLKRGDGYTRSEEKHVAGSSDALVAPVVVNGGLADETSL
NNTAAAYSAMTGSDGTKILTITRPDTHGTKTSLTARLYSDTTKKATLDTIFTVVTSPDSD
KAKMWGHMPETVTAADGAVFKRPLLLKELSSTSGRTAIAEDNEDWAQFTQAQAISTSSNG
CGSEYVPSQAGLESLYEANRGNAMKTVQGWPVASSYLSSTTGSSSLEQRDFKAVNLSSGT
SSIIPSATKELLTCQTTPIVKASQIVLEAADLTKFDRMNNVVKVKKGEEAVLRVTTKDAQ
GKPVGNTAFTLKRNTSVNRANVSTTTSIASLAVTDAWGNTQNDFLSTTLVIYGVTGADGT
TTFTLKQDQTTGLKTELTAALDSSSSTKSTLPVVFTVLTSPDSPKAKFWGHMAETATGDD
GLIYRRPLLRDENSATTSIGTLVEEGEAWSTFPSGQANDTSINGCGAEYVPTDNELRAIY
AHQGSSALHDAIGWPVSRFYISNTVADTFTQTFTYDVVSLKTGDETQMPSSGGALLSCRT
TPVAVASQIIVEANDTAQFVKVDDTLSALKVKKGEDAVIRVVTKNAQGNSVPNVPFILRR
EGSKNRQNAEMINKSITVINAAGASARMNSSSSLLYGVTGADGTTSFTVKQDDSMGLVTN
MYAQLYQLTIESNKLPVMFTVITSPDTPLASYWGHMPETFTTRSGIAFKRPLLTAEHPAG
QSTMANNESWLSLNTAAKNDVSKSDCGEPYQPLLSEFQELYSEHPNGAIGTDLGLPLTNT
WWAYDKIAYANVWYDQSINLSNGSSSRALSNTVAFVSCLVNPHAVAASIEMTSTALDAEK
TASNDGRPSATAAKGTAIRMTVIVRDSGGNLLPGANFNLIRGTALDRAKNRLDSTYDDLT
IVPVTPAGVNMSLYNNGAQALLTTGSDGKATFDVTQNETYGLATPLTATLMRDTTKSATM
DVIFTVITSPNSPKAKYWGHMPDTFTSRAGVTFKRPLLAAEATLGSSVSNNNESWSYLFY
TNKVTPDCPVEYQPRLNELQGLYNDHPGGTILTDLGLPITAGSGNWWTYEMSTTDALTWY
YGVINLKTGQSTTTINGYALMLCLTQPHSAPASLTLSSTAYDEGRTASNGGTPTSSVKKG
EMLPIVVTIKDANGNPVGGEGVTLKRVQAKSRSGISVSSNTVDDLILDEVTPTSARISFN
QNTSAWSGFTGSDGTITFNVTQNNTVGLVTPFTASLARNPQVTANQDLIFTVVTSPDSAK
ANYWGHMPATLTAVNGAVFERPKLWSELTSTSGVGKINNNNEDWPYFTPTQKSDASVSPC
EVARQPLFNDLSSLSARYPNNTFVTETGWPAYYTWWAEDKSADGKDQSVDLRNGTLYTGS
TKSFQPCLANARSTVSSVTLTSTAFDAATQAAKVKKGEAMSVTVTVKDSAGNTVPNVEFT
LKRGEASPRNAGATLYGNVVAMDDLVVQPLSGSAVTLSESGNTISGMTGADGTASFTLRQ
DNTPGYKMPLTVTLANYASATDTLDAIFTVPTSPNVSSAHFWGHMADTVVVNSKSLHRPL
LTTELPSGANPVSSPIINYENWASAHIIDASKWDIARQCGSIENAPTYNELELLHTVFNS
LGWPSSPSFPYLSSQQCGMDEGTGAQDCSITLINKPGLVTCFQ
NT seq
8052 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaccctgaataaaatccttgtgttatgcgcattgctgataagcgcaatgctg
cctgggtggtcatgggcagaatctgcatggcaagactcttcagatacggtcggcgaattt
aacggtaccgtgcccaccgccgacagcgccagcatacccgtctaccagggcagtgtcttt
ctcgatcctacaaagacgcatgaggtagcgtttaccgctaaaccgagtgaattcaacgcg
gatgttagcgtctctaaattgctcgtcaccaacccgcaagacagagaaggcgatatcatt
gccaccccacgttgggaaaaccaaacgccaccggctgtatctttagtttgggcggatgcc
gccacgccggacaccttactggacccacagccagtcgcagatcgctcgttttgtgcacag
ggacttgccgggcgttcgctggtcgcctgggcgcagcctgatccccagcagaccatgccg
ctgttatatttactcacctcgacgggctatccctatgaaagtgttctgatgctcgccgat
cagaaagtgacgctgaagattgcgcccgcgcagggtgaccttatttccgtcagcgctgcg
ggctatgacgaatcctcaggtgcggcgaaaatgacggttgggggcagtatcacgttaacg
gtcaccaccaaagattgcgtcggtaatgttgtggggaatattccttttgttatcaaacgc
aaagatgctgaaaaccgccagggtgtggtgaacaatactgcgcctgtaaaactgggcacg
accgaattaaccaccaccgcgacggaatatcgtggtactaccgatgcgaatggtgttgcc
acggttacggtcacccaggccaacggccctggtgtaaaaacgccgttggtcgcgagcctc
gcgggtattgctcaggccagtgaaacggcagtgatctttaccgtcctcaccagcccggat
gttccgcaggctacaatgtggggtcatatgcccgatacgctgaaggcccgtgattacact
tttagtcgaccaaaactggcggcggaagtcgataatgaaggcggtacggttaacgatcac
aatgaaacctggtccacctttacctggagcggcgcggataaacattgcgacattttgccc
ggaatgcgtcagttcggtgcgctggcgacggtggtgccaacgtcagtgcaggatgtggct
ggttggccgatgcagggtaatttctactggtcatcactggcggggatgagcggccagcac
catgcggcggatgtttcgaaccgcagcgaagcgcaaaaaccggacgatacgacgtttatt
gtgagctgtgtcgataaagaagcgcccgatgttgaaccgaagctggtactgacgccgggc
agctatgattcgacgataaaagcgatgaaagtaaaggtgggggaagaggcttctttacgt
ctgacgattaccgatagcaagaacaacgatcagccgctggcttactactacttttcgctg
catctggatgacggcattaaccgtaagaatcaaactgacgccgcgtgggagacgcatccg
gtacaaattgatggcggcagtaacgttcgcaaagttgacgcccatacctatgaagggatc
actgatgctaacggagaggccactctgacgctgacccagccaggcggcgtgggggtgaaa
actcacatcaccgcgagaatgcgcagtgattttactgcctcggatgagaaagacgttatt
tttacggtgatcaccagccccgataccgacaaagcgcggatgtggggccatatgttgggc
attattgaagcgaacaatatctttaaacgcccacggctggcggatgaaaccgacaacgaa
cagggatcggtgcgggaaaataacgaagactgggcgctgtttgatcagaatagcagtatg
caggctgagtgtggtttaggtcatattccgagccaaagttcattgcacagtttgtttgcc
gctcatccagccaatgccatcggcaccgaatatggctggccaacgttgcaaaaagcgtat
cttagtgcggtggaagagacgtcgcacgcgtcggtaaacctggccacgggcaacatcgac
acctattccggctttaagcaaaactatctctcttgttcgggcaatgagatggtcgcccag
attgccgcgaccaccgatcgtgatgtttccgcaggcagcagagcgcaggccaaagtgggt
gacacgatcaccatgacggtacgcacctttaatgccttgaataatgcacccgtgccgtat
accgcgttcaccattactaaagatatggggaaaaatcgtcaggggcagactacaggtttt
gatgatccaacccgcggcgcaatcgagatgaatggcacactctacggaacatcgcaaccg
tctttagtctatgccggtactacggatgcgcagggttttgcgactgtggaaattaagcaa
tcgcaaggtgtgggcttatcgacgccgctaaatattgtgcctgtgaactcctatattccc
aatactgttaattacaatgtgattttcactacgctcaccagtccggatgcggttggcgcg
cagatgtgggggcatatggatgagacgattaccgtcgatgctttaacctttgcccgaccc
cgactggctgcggaagtgttcagtccggacggcacattaacggaaaataacgaagtctgg
tcgcgagtcagccaggccaacgcctccagcaccagtaaaggtggctgtggcgccaatatg
ctcccacgccgttctcagcttagcgcgctctatgatgccaataacggtgacggtgtacag
acagtacacggctggccaacgcagcgtcagccctactggagcagttcgcccgcagatcag
gtaccgcattattacaccatagccctcaacgatggggcgcggaccgttggcggtagcacg
gcggtttatgtcagttgcctgacgacggctaacaatcctgccagtagcattacgctggaa
gtggtggatccggcgcagtggaacgcggctgcaaatgcggcgaagctgaaaaaaggcgaa
acgctacaggtaaaggtgacggtaaaagatgcgcagggcaatccattgggtgatataccc
tttaccctgaaacgtggcgatggttatacccgctcagaggaaaaacacgttgctggtagc
agtgatgcgctggttgcgccggttgtggtcaatggtggcctggcggacgaaacttcgctt
aataataccgctgcagcatacagcgccatgaccggcagcgacggaactaaaattctcact
attacccgcccggatacccatggcacgaaaacgtcgctgaccgctaggctctattcagat
acaacgaaaaaagcgaccctcgataccatttttaccgttgtaaccagtccggacagcgat
aaggcgaaaatgtgggggcatatgcctgaaacagtgacggctgcagatggagcggtcttt
aaacgcccattattgttgaaagagttatccagtacgtcgggtcgaacagcgattgcggaa
gataatgaagactgggcgcaatttacccaagctcaggctataagcacatcctctaatggt
tgtggtagtgaatatgttccctctcaggccgggctggagtcattgtatgaagccaaccgc
ggaaatgcgatgaaaacggttcagggctggcccgtcgcctcaagttacctttccagcacg
acaggtagtagtagcctggaacagcgtgacttcaaggctgtcaatctcagttcaggcacc
agttcgataattccatctgccacaaaagaactgcttacctgccagacgacgccgattgtt
aaggcaagccaaatcgttcttgaagctgcagacctcacaaaatttgaccgtatgaataat
gttgtcaaagtgaaaaagggtgaagaagccgtattacgagtgaccactaaagatgcgcag
ggtaagcctgtgggaaataccgcatttaccctcaaacgaaacaccagcgtgaacagggcc
aatgtgtcaactacgacgtcgattgcttcactggcggtaacggatgcctggggaaatact
caaaatgattttctttcaacgaccctggttatttatggcgtgacgggggctgatggcacc
accactttcacattgaagcaagaccagactaccgggctaaaaacagaactcacggcagcg
ttggattcctccagcagcactaaatcgacgcttcccgttgtctttacggtgcttaccagc
ccggattcgccaaaagccaaattctgggggcatatggctgaaacggcgacaggcgatgac
ggtcttatttatcgaaggcctttgctgagggacgagaatagtgctaccaccagtatcggt
accctggtggaagagggggaggcctggtctacgttcccgtcgggccaggctaacgatacc
tcgataaatggttgtggcgcggagtatgttccaactgacaatgaacttagggccatttat
gcgcaccaggggagtagcgcattacatgacgctattggctggccagtgtcgaggttctat
atctcgaataccgttgcagatacgttcactcaaacctttacgtatgatgtcgtttcgctg
aagacaggagatgaaacgcagatgccctcatctggtggtgcattactgagctgccggacc
acgcctgtcgccgttgccagtcagatcattgttgaggcgaatgatacggcgcaatttgtc
aaagttgacgacaccttgagtgcgttgaaagtgaaaaaaggcgaagacgcggtgattcgc
gtggtgactaaaaatgcgcagggaaatagcgtgcccaatgtcccctttattctcagacgt
gaaggctcgaagaaccgtcaaaatgccgagatgataaataagtcgattacggtaattaac
gcggcaggcgcttctgcgaggatgaatagttcttcaagcctgctttatggggtgactggc
gcggacgggactacctcctttacggtaaaacaagatgattctatgggcctggtaaccaat
atgtacgcccagttgtatcagctgacgatagaatccaacaaattaccggtcatgtttacc
gtcataaccagcccggatacgccactggcaagttactgggggcatatgcctgaaacgttt
actacccggtcgggaattgcctttaagcggccattgcttactgccgagcatccagcgggg
cagtcaaccatggctaataatgaatcatggctttctttgaatacggcagcaaaaaatgat
gtcagcaaatcagactgcggcgaaccttatcaaccgttattaagcgaatttcaagagtta
tacagtgaacatcctaatggtgcgatagggaccgatttaggccttccgctgactaacacc
tggtgggcttacgataaaattgcctacgcgaacgtctggtacgatcagtctattaattta
tcgaatggatcaagctccagggcattatcaaacaccgtggcatttgtgtcctgtctggta
aaccctcatgcagtggcagcttctatagagatgacctccacggcactggatgcggagaaa
acggccagcaacgatggtcgccctagtgcaacggcggcgaaaggtacggcgatccggatg
acggtgattgtgcgggatagcggaggaaatctgttgccaggcgcaaactttaatctcata
cgcgggactgcgttggatcgtgcaaaaaacaggctagattctacgtatgatgatcttact
atcgtgccggtcacccctgccggagtaaacatgtcactctataataatggggcacaggca
cttctgacgacaggaagtgatggtaaagcgacttttgatgtgacgcaaaacgagacttat
gggctggcaactccgctcactgcaacattgatgcgcgacaccacaaaaagtgccacgatg
gatgttattttcactgtgataaccagtccgaactcaccgaaagcaaaatactggggtcat
atgcccgacacgtttaccagtagggcgggggtgacctttaaacgaccgctactggcagca
gaagcgaccttggggtcctcggtaagtaataataatgagtcgtggtcataccttttttat
accaataaagttacgccggattgcccggttgagtatcagccgcgtctcaatgagttacag
gggctatataatgatcatccaggcgggacaatactgacagatttggggttgcctataact
gccggaagtggaaattggtggacttatgaaatgagcaccactgacgcgttgacgtggtat
tacggcgtcattaatttgaaaacgggacaatcgacgacgactattaatggatacgcttta
atgctctgtctgacgcagccacattcggcaccagcaagccttacgctgtcatcgactgcc
tatgatgagggccgaactgccagcaatggtggtacccccacgtcatctgtgaaaaaaggt
gagatgcttcccatcgtggtgacgatcaaagatgccaatggtaatcctgttggcggcgaa
ggtgttacgctcaagcgcgtgcaggcgaaaagccgttcagggatctctgtatcctccaat
accgtagatgatctcattttagatgaagtcaccccgacatcggcgcgtatctccttcaac
cagaatacgtcggcatggagcggcttcaccggcagtgatggcacgataacgttcaacgtt
acccaaaataacaccgttggtctggtaacgccgtttacagcttcattggcgcgaaatccg
caggttacggctaatcaggacctgatattcacggtagtgaccagcccggattctgcgaag
gctaactactgggggcatatgccagcaaccttgacggcagtgaatggtgcggtatttgaa
cgcccgaaattgtggagtgaactgacatcgacttctggcgtcggcaagatcaataacaat
aatgaagactggccgtactttaccccaacacagaaatcagatgcgagtgtgagcccttgt
gaagtagcaaggcagccactattcaatgatttaagttcgttgtctgcgcgttatccgaat
aacacgtttgtcactgaaactggctggcctgcgtattacacctggtgggcagaggataaa
tccgccgatggtaaagaccagtcggttgatttgagaaatggcacgctgtatacgggttca
acaaaatcatttcagccttgcctggctaacgcgcgttcaacggtttccagcgtcacactt
acctcaacagcgtttgatgcagccactcaggcggcgaaagtgaaaaaaggcgaagccatg
tccgttaccgtgacggtgaaagacagcgccgggaatacggtgccgaatgttgaatttact
ttgaaacgtggtgaggcatcgccgcgtaacgctggggcaacgttgtatggcaatgtagtg
gcgatggacgatctcgtcgttcagccgttatcaggttcggctgttacgctgagtgaaagc
ggtaataccattagtggcatgacaggcgcggatgggacggcaagttttacgctccgccag
gataatacccctggttataaaatgccactgacggttactctggctaattacgcttccgcg
acagacacgctggatgctatttttacggtgccaaccagcccaaatgtttcatcggcgcac
ttttggggacatatggcagacacggtagtggtgaatagtaaatcgctacatcgaccgttg
ttaacgacggaattgccgtccggggctaatcccgtatcctcaccgattattaactacgaa
aactgggcttctgcacatatcattgatgccagtaaatgggatatcgcaaggcagtgtggc
agcatagaaaatgcaccgacatacaatgaattagagttgttgcatactgtttttaattca
ctgggatggccgtcttcacccagttttccttatttgtcctctcaacagtgtgggatggac
gaaggtactggagcgcaggattgtagtatcacgctaataaataaaccgggtctggtgacc
tgcttccagtaa
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integrated database retrieval system
