Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_03041
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Entry
ECOPMV1_03041 CDS
T02847
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecoi03009
]
ECOPMV1_03041 (rlmD)
Enzymes [BR:
ecoi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ECOPMV1_03041 (rlmD)
Ribosome biogenesis [BR:
ecoi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ECOPMV1_03041 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
PCMT
Methyltransf_11
Methyltransf_15
MTS
Cons_hypoth95
Methyltransf_4
Methyltransf_23
Methyltr_RsmB-F
Ubie_methyltran
FtsJ
PrmA
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
CDH66413
LinkDB
All DBs
Position
complement(3110380..3111681)
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AA seq
433 aa
AA seq
DB search
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQ
YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVI
ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACL
GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILE
TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDCVLDLFCGMGNF
TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV
LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT
GHLESMVLFSRVK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcacgacgacgcgtcagatcataaccgtttca
gtcaacgacctcgactcttttggtcagggtgtggcgcgacataacggcaaaacattattt
atccccggattattgccgcaggaaaacgcggaagttactgttactgaagataaaaaacag
tatgcccgcgctaaagtcgtacgccgattaagcgatagcccggaacgcgaaacgccacgc
tgtcctcattttggcgtatgcggcggctgtcagcaacaacacgccagtgtggatttacag
cagcgaagcaaaagtgcggcactcgcccgattaatgaaacacgaagtctctgaagtgatc
gccgatgttccctggggctatcgccgtcgcgcgcgtttaagtctgaactacttaccgaaa
acacagcaacttcagatggggtttcgcaaagcgggctccagtgacattgtcgacgttaaa
caatgccccattttagtgccccaacttgaagcattgctgcccaaagtcagggcatgcctg
ggcagcttacaagctatgcgccatcttggtcatgttgaactggtacaggcaaccagcggc
acgctaatgattttgcgccataccgcaccgctaagttcggcagatcgcgaaaaactggaa
tgcttttcgcattctgaaggcctggatctgtatctcgcccccgatagtgagatactcgaa
accgtctctggtgagatgccctggtatgactcaaatgggttgcgcttaacttttagcccg
cgcgattttattcaggtcaatgcgggtgtgaaccagaaaatggtagcgcgtgcgttggaa
tggctggatgtggaacctgaagattgcgtactggatctgttctgcggtatgggcaacttt
acactgccattggcgacacaagctgccagtgtggtgggtgtagaaggtgttccggcgctg
gtggaaaaaggccagcagaatgcgcgtcttaatggcttacagaatgtgacgttttatcac
gaaaatcttgaagaagatgtcacaaagcagccgtgggcgaaaaacggcttcgataaagtg
ttgctggacccggcgcgagcaggtgccgcaggtgttatgcagcaaattataaaactggaa
cctattcgtatagtttatgtatcctgtaaccctgcaacgctggctcgggatagcgaagcg
ttattaaaagcaggatataccattgcgcgactggcgatgctggatatgttcccacacacg
ggacatctggaatcgatggtacttttctcgcgcgttaaatag
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