Escherichia coli O18 K1 PMV-1 (ExPEC): ECOPMV1_03107
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Entry
ECOPMV1_03107 CDS
T02847
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ecoi
Escherichia coli O18:K1 PMV-1 (ExPEC)
Pathway
ecoi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ecoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ECOPMV1_03107 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecoi03400
]
ECOPMV1_03107 (recB)
Enzymes [BR:
ecoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ECOPMV1_03107 (recB)
DNA repair and recombination proteins [BR:
ecoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ECOPMV1_03107 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Cas_Cas2CT1978
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
CDH66474
LinkDB
All DBs
Position
complement(3185132..3188674)
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AA seq
1180 aa
AA seq
DB search
MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYKRLLEEIDDKAQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDAVKQQWRDAV
GELDALIESSGIDRRKFNRSNQAKWIEKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA
GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDS
ALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIY
AFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKS
AGKNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALL
MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL
QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDS
NASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDL
NAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPQDAAGLRTCIEALCNDDIAWQTAQIGDNQPWQVNDALTAELNARTLQRLPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFE
DLDFTQPIDPNWVQEKLELGGFEPQWELVLTEWITAVLQAPLNETGVSLNQLSDRDKQVE
MEFYLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDKEHPQQGIYATRPNAGLIDLMDEMFASMTLEEA
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtcgccgagacactagatcctttgcgcttgcccttacagggcgagcgcctg
attgaagcctctgccggcacaggcaaaacctttacgattgcggcgctctatttgcgcctg
ttacttggactaggcggttctgccgcctttccccgcccgctgaccgttgaagaactgctg
gtggtgacctttaccgaggctgctacggcagaattgcgtggtcgtatccgtagcaatatc
cacgagttgcgcatcgcctgtctgcgtgaaaccaccgacaatccactgtacaaacgcctg
ctggaagagatcgacgataaagcgcaagccgcgcagtggttgttgttagccgagcggcag
atggatgaagcggcagtctttactattcacggcttttgccagcgcatgctcaacctgaat
gcctttgaatccggcatgctgtttgagcagcagctgattgaagatgagtctctgctacgc
taccaggcctgcgccgatttctggcgtcgccactgctacccgctgccgcgtgaaattgcc
caggtcgtctttgaaacctggaaagggccgcaggcgttgctgcgcgatattaatcgttat
ctgcaaggcgaagcgccggttatcaaagcaccgccccccgatgatgaaacgctggcttcc
cgccacgcgcaaattgtggcgcgtattgatgccgtaaaacagcagtggcgcgacgcagtg
ggtgaactggatgcgctgatcgaatcttctggtattgatcgacgcaagtttaaccgtagc
aatcaggctaaatggatcgagaagatcagcgcctgggcagaagaagagaccaacagctat
cagttgccggagtcgctggaaaaattctctcagcgtttcttagaagatcgcacgaaagcc
gggggggaaaccccgcgacatccactgtttgaggcgatcgatcaactgcttgcagaacca
ttgtcgatccgcgatctggtgatcactcgcgcattggctgagatccgcgaaacagtagcg
cgtgaaaaacgccgccgtggcgaattgggttttgatgacatgttaagtcggctcgattcc
gcgctgcgtagtgaaagcggcgaggtattggcagcggcgatccgtacgcgattcccggtg
gcaatgatcgatgaatttcaggataccgacccccaacagtatcgaatttttcgccgtatc
tggcaccatcagccggaaaccgcattgttgctgattggcgacccgaaacaggccatatat
gcattccggggtgcggatatcttcacttatatgaaggcgcgtagcgaagttcatgctcac
tacaccttagataccaactggcgttccgcaccgggaatggtgaacagcgttaacaaactt
ttcagccagactgatgacgcgttcatgtttcgtgaaataccgtttattcctgtgaaatct
gccggcaaaaatcaggcgttacgttttgtatttaaaggtgaaacgcagcctgcgatgaaa
atgtggctgatggaaggcgaaagctgcggcgttggcgactatcaaagtaccatggcgcag
gtatgtgctgcgcaaatctgcgactggctacaagccgggcaacgcggcgaagcgttgctg
atgaacggcgacgatgcgcgtccggtgcgtgcttcggacatcagtgtgctggtgcgcagc
cgccaggaggccgctcaggtgcgcgatgccttaacgctgctggaaatcccttccgtttac
ctttcgaaccgcgacagtgtttttgaaactctggaagcacaggagatgctttggctgttg
caggcggtgatgacgcccgaacgtgagaacaccctgcgcagtgcgctggcaacgtcaatg
atggggctgaatgcgctggatattgaaacgctgaataatgacgaacatgcgtgggatgcg
gtcgtcgaagagttcgatggttatcggcaaatctggcgcaaacgtggcgttatgccgatg
ctgcgggcgctgatgtcggcgcgtaacattgcagaaaacttgctggcaacggcaggcggt
gagcggcgtcttaccgatatcttgcatatcagcgaactgctacaagaagccggaacgcag
ctggaaagtgaacatgcgctggtacgctggttatcgcaacatatcctcgagccagacagt
aatgcctccagccaacaaatgcgcctcgaaagtgataaacatctggtgcagattgtcacg
atacacaaatcaaaagggctggaatatccgctggtctggttgccatttattaccaatttc
cgcgtccaggatcaggcgttttatcacgatcgccactcgtttgaggccgttctggatctt
aatgctgcgccagaaagcgtcgacctcgcggaggccgaacgtctggcggaagatctgcgt
ttgctttacgtggcgctgacgcgttcggtttggcattgcagtctcggcgttgcaccgctg
gtgcgccgtcgtggcgataaaaaaggtgataccgacgtccaccaaagtgcgctcgggcgt
ttgctgcaaaaaggagaaccgcaagatgcggcagggcttcgtacctgtattgaagcgttg
tgcaatgatgatattgcctggcaaacggcacaaattggtgataaccagccctggcaggtt
aatgatgcattaactgcagaactgaatgcgaggacgctacaacgattgcccggcgataac
tggcgtgtcaccagctactccggtttgcagcagcgtggtcacggtatcgctcaggatctg
atgccacggctggatgttgatgccgcaggcgtggtcagcgtcgttgaagaaccgacgtta
acaccgcatcagttcccgcgcggtgcgtcaccggggacattcttgcacagtttgtttgaa
gacctcgattttacccagccgattgacccgaactgggtacaggaaaaactggagctcggt
ggctttgaaccgcagtgggaactggtgttgactgagtggatcacggctgtcctccaggca
cctctcaatgaaacgggtgttagcctgaatcagctttccgatcgcgataaacaggtggag
atggagttttacctgccgattagtgaaccgcttatcgccagccagcttgatgcactaatt
cgccagtttgacccgctatccgctggctgcccgccgctggagttcatgcaggtacgtggc
atgttaaaaggctttatcgatctggtgttccgccacgaagggcgttattacctgctcgac
tataaatccaactggttgggtgaagacagttcggcttacacccaacaggctatggcagcg
gcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcaccgt
tatctgcgccatcgtattgctgattacgactatgagcgccactttggcggcgttatttat
ctgttcctgcgtggcgttgataaagaacatccgcaacaagggatctacgcgacccgaccc
aacgccgggttgattgacctgatggatgagatgtttgccagtatgaccctggaggaggcg
taa
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