Escherichia coli JJ1886: P423_07955
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Entry
P423_07955 CDS
T02896
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecoj
Escherichia coli JJ1886
Brite
KEGG Orthology (KO) [BR:
ecoj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoj03019
]
P423_07955
Enzymes [BR:
ecoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P423_07955
Messenger RNA biogenesis [BR:
ecoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P423_07955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AGY84306
LinkDB
All DBs
Position
1612501..1616403
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDHAAGK
VLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QSAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
ADEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPADYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKTRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDED
VKEVRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaaattgacctttactgccttgcagcagcggctggattcgttgatg
ctgcgtgacagattgcgtttttctcgccgtctgcacggtgtgaagaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagagattgaccatgcggcagggaaa
gtcctgctgcgtgaagcggcacgaccggagattacttacccggacaatttgccggttagt
cagaaaaagcaggacattctcgaagcgattcgtgaccaccaggtggtgatcgtcgccggg
gaaacgggttccggtaaaacgactcagctaccgaaaatctgtatggagctggggcgcggg
attaaagggctgatcggccatacccagccgcgtcggctggcggcgcgaacggtggcgaac
cgtattgcggaagagctaaaaacggagccgggcggttgcatcggttacaaagtgcgtttc
agcgatcacgtcagtgataacacgatggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaagaccgcctgctgatgcagtacgacaccatcattattgacgaagcgcac
gaacgcagcctgaatatcgattttctgctcggctatttgaaagagttgctgccgcggcgt
cctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgccac
tttaataatgcgccgattatcgaagtctccggtcggacctatccggtggaagtgcgctat
cgcccgattgttgaagaagccgatgataccgagcgcgatcagttgcaggcgatttttgac
gccgtagacgaactgagccaggaaagccctggcgacattctgatctttatgagcggcgag
cgagaaattcgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaaatc
ttgccgctttatgcacggctttccaacagcgaacagaaccgcgtgttccagtcgcacagc
gggcgacgcattgtactggcgaccaacgtcgcggaaacctcgctgaccgtaccgggtatt
aaatacgttatcgacccaggtacagcgcgtatcagccgctacagctatcgcaccaaagtg
cagcgtttgccgattgagccaatttcgcaggcttcagctaatcagcgtaaaggccgctgt
ggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctttcgcgc
ccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcactgggcttgggcgatatcgccgcattcccgtttgtcgaagcaccggataaacgc
aatatccaggatggcgtgcgtctgctcgaagaactgggcgcgatcaccactgatgaacag
caaagtgcttataaactgacgccgctcggtcgtcagctctcgcagttgcctgtcgaccca
cgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggatccgcgcgagcgtccgatggataaacagcaggca
gctgacgaaaaacatcgtcgcttccacgacaaagagtctgacttcctggcatttgtgaat
ctgtggaattatcttggcgagcagcaaaaggcgctttcttcaaacgccttccgtcgcctg
tgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacccag
ttgcgccaggtggtgaaagaacttggcattccggttaacagcgaaccggcggattatcgc
gaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgccgat
aaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggttta
ttcaaaaagccgccgaaatgggtaatggtggcggaactggtagaaaccagccgcctgtgg
gggcgcattgctgcgcggatcgacccggaatgggtggagccagttgctcagcatttgatt
aaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacggaa
aaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgcgaaaacctgaaactacgggcggaagtagaagagctggaa
cacaaaactcgtcgccgcgatattctggtggatgacgaaacgttgtttgagttctacgac
cagcgcatcagtcacgatgtgatctctgcacgccatttcgacagttggtggaaaaaagtc
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggggcg
gaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctgcgt
ttgagttatcagtttgagccgggggcagatgctgacggcgtgaccgtacatattccgctg
ccgctgcttaaccaggttgaggagagcgggtttgagtggcagatccccggcctgcgccgt
gagctgatcatcgccctgattaaatcgttgccgaagccggtacgccgtaattttgtacct
gcgccaaactatgccgaagcgtttttaggccgcgtcacaccgctggaattgccgttgctc
gacagccttgaacgagagcttcggcggatgactggcgtcaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggatgacaaaaac
aagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaagtg
caggaaacgctgtctgccgtggcggatgacggtatcgagcagagcggtttacatatctgg
agttttggtcaactgccggaaagctacgagcagaagcgcggcaactacaaagtgaaggct
tggccggcgctggtggatgagcgtgacagcgtagcgatcaaactgtttgataacccgctg
gaacagaagcaggcaatgtggaacggtcttcgccgtttactgctgctaaatattccatcg
ccgatcaagtacttgcacgaaaagctgccaaacaaagccaagctggggctgtactttaac
ccgtatggcaaagtgctggagctgatcgatgactgtatctcctgcggtgtggatcaactg
atcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaaaaa
gtccgtgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctc
actgcggtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcgctg
gggctttctgacattaaagcgcagatgggcgggctggtgtatcgcggttttgtcactggt
aacggcttcaaacgactgggcgacacgctgcgatatttgcaggcaattgaaaaacgactg
gaaaaactggcggtcgatccacatcgcgaccgtgctcagatgctgaaagtcgaaaacgtc
cagcaggcgtggcagcaatggatcaacaaactaccgcctgcacgtcgtgaggatgaagac
gtgaaagaggtccgctggatgatagaagagctgcgcgttagttacttcgctcaacaactt
ggcacgccttatccgatttcggataagcgtattttgcaggcgatggagcagattagcggt
taa
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