Escherichia coli JJ1886: P423_19140
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Entry
P423_19140 CDS
T02896
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ecoj
Escherichia coli JJ1886
Pathway
ecoj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecoj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P423_19140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecoj03019
]
P423_19140
03400 DNA repair and recombination proteins [BR:
ecoj03400
]
P423_19140
Enzymes [BR:
ecoj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P423_19140
Messenger RNA biogenesis [BR:
ecoj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P423_19140
DNA repair and recombination proteins [BR:
ecoj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
P423_19140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AGY87679
LinkDB
All DBs
Position
complement(3912704..3914800)
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AA seq
698 aa
AA seq
DB search
MEKHGAELLLQRMLSNTSATFREGQWEAIDAVVNQRRKLLVVQRTGWGKSAVYFIASKIF
RDRGAGPTIIISPLLALMRNQVAAAERLGITAETLNSTNREEWQRISDKLLQGGVDCLLI
SPERLANQDFLETVLYPVADRIGLLVVDEAHCISDWGHDFRPDYRRILDILRQLPANTPI
LGTTATANNRVVEDIRQQLGDIVIQRGTLARESLALDALVLGEQSSRLAWLATVIPQFSK
SGIVYTLTTRDAELVAEWLRKNGISAFAYYSGVTCEGAEDSNTAREYLEQALLANKIKVL
VATTALGMGFDKPDLGFVIHYQMPGSIVGYYQQVGRAGRAIDSAVGILLCGGEDRAIHQF
FRESAFPAEAQIHEILNVLSENDGLTLRGIEQRTNLRYGQIEKALKLLVAENPSPVVYTE
KLWRRTIVSFSPDHERINHLMNQRKSELADVESYITTKECKMQFLRRALDEPSAERCGKC
SSCLQHPLLSPDIDSDLLHAANLFIKHADLPLNLNKQVASGAFTQYGFKGNLPAGLQGST
GRILSRWGDSGWGKQVAQEKKTGRFSDELVEACAEMVRQRWNPHPEPTWVCCVPSLRHLD
LVPDFARRLAAKLGLPFIDAIEKVVDNPPQKMQQNRFHQCQNLDGAFVITPPLMPGPALL
VDDIVDSAWTLTVLTALLRQAGCPTVYPLALASTSVKN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacacggagctgaattgctgttacagcggatgttaagtaacaccagcgctact
ttcagggaagggcaatgggaagctatagatgcggtggttaatcagcggcgaaaactactg
gttgtacagcgcaccggctgggggaaaagtgccgtgtacttcatcgccagtaaaatcttc
cgcgatcgcggcgctggcccgacaattatcatctctcctttgcttgccctgatgcgtaac
caggttgccgccgctgaacggttaggtattacggctgaaacgttgaattctacaaacagg
gaagaatggcagcgcattagcgataagttgctgcaaggtggcgtagattgtctgctgatt
tcacctgaacggttggcgaatcaggattttcttgaaacggttttatatccagtcgctgac
cgcatcggtttactggtggtcgatgaggcgcactgcatctctgattggggccacgatttc
cgcccggattaccgacgtatattagatattttgcgccaactgcctgcgaatacccctatt
ctgggtacaaccgcgacagcgaataaccgtgtcgttgaggatatccgtcagcaattgggt
gacattgtgattcagcgtggaacgctggctcgcgaaagtttggcgcttgatgccttagtc
ttaggagaacagtcatcccgtctggcatggttagcaacggttatccctcagttttccaaa
tcgggaattgtttataccctgacgactcgcgatgctgaacttgtcgccgagtggttaagg
aaaaatggtatcagtgcatttgcttattacagcggcgtgacttgtgaaggtgcggaagat
tctaatactgccagggagtatctggagcaggcactgctggcaaataaaatcaaagtgctg
gtcgcgacgacggcattaggtatgggatttgataaacctgatttaggtttcgtcattcat
tatcagatgccggggtctattgtcggttactaccaacaggtggggcgtgccgggcgtgct
atagattccgcagttggcatattgctttgtggtggtgaagaccgcgctattcatcaattc
ttccgtgaaagcgcctttcctgcggaggcgcaaattcatgaaatactcaacgtacttagc
gagaatgacggtcttaccctacgaggcattgaacaacggacgaatcttcgttatgggcaa
atagaaaaagcactgaaattattggtagctgaaaatccatcgcctgtggtgtataccgag
aaattatggcgcagaactatcgtcagtttttctcctgatcatgaacgaattaaccatttg
atgaatcagagaaaaagtgagttggcagacgttgaaagctatatcacgaccaaggagtgc
aaaatgcaatttctgcgccgcgcactcgatgagccaagtgccgaacgttgtggtaaatgt
agcagttgtcttcagcatccgctgttgtcgcccgacattgatagcgacttactccatgcg
gcaaatttatttattaaacacgctgacctgccattaaatctcaataaacaggtggcatct
ggggcttttacgcaatacggatttaaagggaacttgcctgcgggtttacaaggatctacg
gggcgaatcctttctcgttggggagattccgggtggggaaagcaggtagcccaggagaaa
aaaacggggcgcttcagtgatgagctggtggaggcatgtgcggaaatggttcgccaacgc
tggaatccgcatcctgaacccacctgggtatgctgcgttccttcattaaggcacctcgac
ctggttcctgattttgcccggcgactggcggcgaaacttggcttaccttttattgatgcc
attgaaaaagtcgtggacaatccaccgcagaaaatgcagcaaaaccgttttcaccagtgt
caaaatctcgacggggcgtttgtgattacccctcctttgatgccaggtccggcgttgctg
gttgatgatatcgtggattctgcatggacgctgacagttctgacagcactgttacgccag
gcaggttgcccgacggtttatcctcttgcccttgcttctacctcggtaaaaaattga
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