KEGG   Escherichia coli JJ1886: P423_24175
Entry
P423_24175        CDS       T02896                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
ecoj  Escherichia coli JJ1886
Pathway
ecoj02020  Two-component system
Brite
KEGG Orthology (KO) [BR:ecoj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    P423_24175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecoj03021]
    P423_24175
Transcription machinery [BR:ecoj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     P423_24175
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_24 PhyR_sigma-like HTH_36 HTH_28 HTH_23 HAC6_helical HTH_11 TnsD PCI DUF2774 HTH_40 HTH_3 GerE HTH_IclR HTH_Mga HTH_10 MarR
Other DBs
NCBI-ProteinID: AGY86919
LinkDB
Position
complement(4972573..4973094)
AA seq 173 aa
MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRD
PRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDG
LNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLEYGL
NT seq 522 nt   +upstreamnt  +downstreamnt
atgtctgaccgcgccactaccacagcttccttaacgttcgagtcgctttatggcacacat
cacggctggttgaaaagctggctgacgcgcaaactccagtctgcttttgatgcagatgac
attgcccaggacacttttttgcgggtaatggtcagcgaaacgctctcgacgatccgcgat
cctcgctccttcctctgcactatcgccaaacgcgtgatggtggacctgtttcgccgaaac
gcgctggaaaaagcgtatctggagatgctggcgcttatgccggaggggggagcgccttca
cctgaggaacgcgaaagccaactcgagaccctacaactcctcgacagcatgctggacggg
ctaaacggcaaaacacgtgaagcgtttctgctttcgcaactggatggtctgacatacagc
gagattgcgcacaaactcggtgtttccatcagctccgtgaaaaaatacgtggcgaaagcc
gtcgagcactgcctgctgttccgtctggagtatgggttatga

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