Escherichia coli K-12 MDS42: ECMDS42_1127
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Entry
ECMDS42_1127 CDS
T02541
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ecok
Escherichia coli K-12 MDS42
Brite
KEGG Orthology (KO) [BR:
ecok00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecok03019
]
ECMDS42_1127 (hrpA)
Enzymes [BR:
ecok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ECMDS42_1127 (hrpA)
Messenger RNA biogenesis [BR:
ecok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ECMDS42_1127 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
PhoH
AAA_16
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BAL38392
LinkDB
All DBs
Position
1195680..1199525
Genome browser
AA seq
1281 aa
AA seq
DB search
MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPV
SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVA
NRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEA
HERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVR
YRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTE
ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK
VQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQ
MTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVD
PRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFV
NLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY
REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRL
WGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQ
IDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFY
DQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKL
RLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV
PAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDK
NKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVK
AWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEKLPNKAKLGLYF
NPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQI
LTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR
LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQ
LGTPYPISDKRILQAMEQISG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgtgacagactgcgtttttctcgccgtctgcacggcgtgaagaaggttaaaaat
cctgatgcacaacaggccattttccaggagatggcgaaagagattgaccaggcggcaggg
aaagtcctgctgcgtgaagcggcacgaccggaaattacttatcctgacaatttaccggtt
agtcagaaaaaacaggacattctcgaagcgattcgtgatcaccaggtggtgatcgtcgcc
ggggaaacgggttctggtaaaacgactcagttaccgaaaatctgtatggagctggggcgc
gggattaaaggactgatcggccatacccagccgcgtcgtctggcggcaagaacagtggcg
aaccgtattgcggaagagctgaaaacggagccgggcggttgcatcggttacaaagtgcgt
ttcagcgatcacgtaagtgataacacgatggtcaagctgatgaccgacggtatcctgctg
gcggagatccagcaagaccgcctgctgatgcagtacgacactatcattattgacgaagcg
cacgaacgcagcctgaatatcgattttttgctcggctatttgaaagagttgctgccgcgg
cgtcctgacctaaaaatcattatcacttccgcgactatcgacccggaacgcttttcgcgc
cactttaataatgcgccgattattgaagtctccggtcggacctatccggtggaagtgcgc
tatcgcccgattgttgaagaagccgatgacaccgagcgcgatcagttgcaggcgattttt
gacgccgtagacgaactgagtcaggaaagccatggcgacattctgatctttatgagcggc
gagcgggaaatccgcgataccgccgatgcgctgaacaagctgaacttacgccataccgaa
atcttgccgctttatgcgcggctttcgaacagcgaacaaaatagggtattccagtcgcac
agcggacggcgcattgtgctggcgaccaacgtcgcggaaacgtcgctgaccgtaccgggg
attaaatacgttatcgaccccggtacagcgcgtatcagccgctacagctatcgcaccaaa
gtgcagcgtttgccgattgagccgatttcccaggcgtctgccaatcagcgtaaaggccgc
tgtggtcgtgtgtccgaagggatctgtattcgtctctattccgaagacgatttcctctcg
cgcccggagtttaccgatccggagattctgcgtaccaacctggcctcggttattttgcag
atgaccgcgctggggctgggcgatatcgctgcgttcccgtttgtcgaagcaccggataaa
cgcaatatccaggatggcgtgcgtctgctcgaagagctgggcgcgatcaccactgatgaa
caggccagcgcctataaactgacgccgctcggtcgccagctctcgcagttgcctgtcgac
ccacgtctggcgcgtatggtgctggaagcgcaaaaacatggctgcgtgcgtgaggcgatg
attatcacgtccgcgctctccattcaggatccgcgcgaacgtccgatggacaaacagcag
gcatcggacgaaaaacatcgtcgcttccacgacaaagagtctgactttctcgcgtttgtg
aatctgtggaattatcttggcgagcagcaaaaggcgctttcttccaacgccttccgtcgc
ctgtgtcgtaccgattatctcaactatctgcgcgtgcgcgaatggcaggatatctacacc
cagttgcgtcaggtggtgaaagaacttggcattccggttaacagcgaaccggcggagtat
cgcgaaattcacattgcgttgctgaccggtttactttcccatatcggcatgaaagatgcc
gataaacaagaatataccggcgcacgtaacgcgcgtttctccatcttccccggttctggt
ttattcaaaaaaccgcctaaatgggtaatggtggcggaactggtagaaaccagccgcctg
tgggggcgcattgctgcgcgtatcgacccggaatgggtggagccagttgctcagcatttg
attaaacgcacctacagcgaaccgcactgggaacgggcgcagggcgcggtgatggcaacg
gaaaaagtcactgtttatggtttgccgattgttgccgcgcgcaaggtcaactacagccag
atcgatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactgg
cagacgcgtcacgcattcttccgtgaaaacctgaaactacgggcggaagtagaagagctg
gaacacaaatcacgtcgccgcgatattctggttgatgacgaaacgttgtttgagttctac
gaccagcgcatcagccacgatgtaatctccgctcgccacttcgacagctggtggaaaaaa
gtcagccgcgaaacgcctgatttgctcaactttgaaaaaagcatgttgatcaaagagggc
gcagaaaaaatcagcaagctggattacccgaacttctggcatcagggcaatctcaagctg
cgtttgagctatcagtttgagcccggcgcggatgctgacggtgtgaccgtacatattccg
ctgccgttacttaaccaggttgaggaaagcgggtttgaatggcagatccccggtctgcgc
cgcgaactggtgattgctctgattaaatcgttgccgaaaccggtacgccgtaattttgta
cccgcgccaaactatgccgaagcgtttttaggccgcgtcaaaccgctggagttaccgttg
ctcgacagccttgagcgcgagttacggcggatgaccggcgttaccgttgaccgcgaagac
tggcactgggatcaggtgcccgatcacctgaaaattaccttccgcgtggtggatgacaaa
aacaagaagctaaaagaagggcgctcgctacaagatctgaaagatgcgctgaaaggcaaa
gtgcaggaaacgctatctgcggtggcggatgacggtatcgagcagagcggcttacatatc
tggagttttggtcagctgccggaaagctacgaacagaagcgtggcaactacaaagtgaag
gcgtggccggcgctggtggatgagcgcgacagtgtggcgatcaaactgtttgataacccg
ctggagcaaaagcaggcaatgtggaacggtcttcgccgtctactgctgctgaatattcca
tcgccaatcaaatatttacatgaaaagttaccgaacaaagccaagctgggactgtacttt
aacccgtatggcaaagtgctggagctgatcgacgactgtatctcctgcggtgtggataaa
ttgatcgacgccaatggtggcccggtctggacggaagaaggctttgctgcgctgcatgaa
aaagtgcgtgccgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatc
cttacggcagtgttcaatatcaacaaacgtctgaaagggcgggtggatatgaccatggcg
ctggggctttctgacattaaagcgcagatgggcgggttggtatatcgcggttttgtcact
ggtaacggcttcaaacggctgggcgacacgctgcgatatttgcaggcgattgaaaaacgg
ctggaaaaactggcggttgatccacatcgcgaccgtgcgcagatgctgaaagtcgaaaac
gtccagcaggcgtggcagcaatggatcaacaaactgccgcccgcacgtcgtgaggatgaa
gacgtgaaagagatccgttggatgatagaagagttgcgcgttagttacttcgctcaacaa
cttggtacgccttatccgatttcagataagcgtattttgcaggcgatggagcagattagc
ggttaa
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