KEGG   Escherichia coli K-12 MDS42: ECMDS42_2266
Entry
ECMDS42_2266      CDS       T02541                                 
Symbol
ygcB
Name
(GenBank) conserved protein, member of DEAD box family
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
ecok  Escherichia coli K-12 MDS42
Brite
KEGG Orthology (KO) [BR:ecok00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ecok02048]
    ECMDS42_2266 (ygcB)
Enzymes [BR:ecok01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ECMDS42_2266 (ygcB)
Prokaryotic defense system [BR:ecok02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    ECMDS42_2266 (ygcB)
SSDB
Motif
Pfam: Cas3_HD Cas3-like_C_2 DEAD ResIII Helicase_C AAA_19 PhoH AAA_30 UvrD-helicase T2SSE TUSC2 PLDc_2
Other DBs
NCBI-ProteinID: BAL39465
LinkDB
Position
complement(2395088..2397754)
AA seq 888 aa
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSK
QRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLY
WFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASL
ASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTF
LFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLV
DALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQQIADSVIFALPTQATANAMLTRMEAS
ASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIG
VCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVI
LLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSI
QPEPICLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLF
HARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLF
QRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGAS
LFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDND
ETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRS
FSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
NT seq 2667 nt   +upstreamnt  +downstreamnt
atggaaccttttaaatatatatgccattactggggaaaatcctcaaaaagcttgacgaaa
ggaaatgatattcatctgttaatttatcattgccttgatgttgctgctgttgcagattgc
tggtgggatcaatcagtcgtactgcaaaatactttttgccgaaatgaaatgctatcaaaa
cagagggtgaaggcctggctgttatttttcattgctcttcatgatattggaaagtttgat
atacgattccaatataaatcagcagaaagttggctgaaattaaatcctgcaacgccatca
cttaatggtccatcaacacaaatgtgccgtaaatttaatcatggtgcagccggtctgtat
tggtttaaccaggattcactttcagagcaatctctcggggattttttcagtttttttgat
gccgctcctcatccttatgagtcctggtttccatgggtagaggccgttacaggacatcat
ggttttatattacattcccaggatcaagataagtcgcgttgggaaatgccagcttctctg
gcatcttatgctgcgcaagataaacaggctcgtgaggagtggatatctgtactggaagca
ttatttttaacgccagcggggttatctataaacgatataccacctgattgttcatcactg
ttagcaggtttttgctcgcttgctgactggttaggctcctggactacaacgaataccttt
ctgtttaatgaggatgcgccttccgacataaatgctctgagaacgtatttccaggaccga
cagcaggatgcgagccgggtattggagttgagtggacttgtatcaaataagcgatgttat
gaaggtgttcatgcactactggacaatggctatcaacccagacaattacaggtgttagtt
gatgctcttccagtagctcccgggctgacggtaatagaggcacctacaggctccggtaaa
acggaaacagcgctggcctatgcttggaaacttattgatcaacaaattgcggatagtgtt
atttttgccctcccaacacaagctaccgcgaatgctatgcttacgagaatggaagcgagc
gcgagccacttattttcatccccaaatcttattcttgctcatggcaattcacggtttaac
cacctctttcaatcaataaaatcacgcgcgattactgaacaggggcaagaagaagcgtgg
gttcagtgttgtcagtggttgtcacaaagcaataagaaagtgtttcttgggcaaatcggc
gtttgcacgattgatcaggtgttgatatcggtattgccagttaaacaccgctttatccgt
ggtttgggaattggtcgaagtgttttaattgttgatgaagttcatgcttacgacacctat
atgaacggcttgctggaggcagtgctcaaggctcaggctgatgtgggagggagtgttatt
cttctttccgcaaccctaccaatgaaacaaaaacagaaacttctggatacttatggtctg
catacagatccagtggaaaataactccgcatatccactcattaactggcgaggtgtgaat
ggtgcgcaacgttttgatctgctagctcatccagaacaactcccgccccgcttttcgatt
cagccagaacctatttgtttagctgacatgttacctgaccttacgatgttagagcgaatg
atcgcagcggcaaacgcgggtgcacaggtctgtcttatttgcaatttggttgacgttgca
caagtatgctaccaacggctaaaggagctaaataacacgcaagtagatatagatttgttt
catgcgcgctttacgctgaacgatcgtcgtgaaaaagagaatcgagttattagcaatttc
ggcaaaaatgggaagcgaaatgttggacggatacttgtcgcaacccaggtcgtggaacaa
tcactcgacgttgattttgattggttaattactcagcattgtcctgcagatttgcttttc
caacgattgggccgtttacatcgccatcatcgcaaatatcgtcccgctggttttgagatt
cctgttgccaccattttgctgcctgatggcgagggttacggacgacatgagcatatttat
agcaacgttagagtcatgtggcggacgcagcaacatattgaggagcttaatggagcatcc
ttatttttccctgatgcttaccggcaatggctggatagcatttacgatgatgcggaaatg
gatgagccagaatgggtcggcaatggcatggataaatttgaaagcgccgagtgtgaaaaa
aggttcaaggctcgcaaggtcctgcagtgggctgaagaatatagcttgcaggataacgat
gaaaccattcttgcggtaacgagggatggggaaatgagcctgccattattgccttatgta
caaacgtcttcaggtaaacaactgctcgatggccaggtctacgaggacctaagtcatgaa
cagcagtatgaggcgcttgcacttaatcgcgtcaatgtacccttcacctggaaacgtagt
ttttctgaagtagtagatgaagatgggttactttggctggaagggaaacagaatctggat
ggatgggtctggcagggtaacagtattgttattacctatacaggggatgaagggatgacc
agagtcatccctgcaaatcccaaataa

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