Escherichia coli LY180: LY180_18090
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Entry
LY180_18090 CDS
T02846
Name
(GenBank) biofilm formation regulator HmsP
KO
K26149
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
ecol
Escherichia coli LY180
Brite
KEGG Orthology (KO) [BR:
ecol00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LY180_18090
Enzymes [BR:
ecol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
LY180_18090
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GFIT
Motif
Pfam:
EAL
GAPES3
GGDEF
HAMP
CHASE8
CASP_dom
UL41A
Motif
Other DBs
NCBI-GeneID:
16981288
NCBI-ProteinID:
AGW10584
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Position
complement(3789546..3791534)
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AA seq
662 aa
AA seq
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MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPLSSA
ILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPVMVTRLFELPVQI
SLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLVTIYLLLSLILTVAISWCINR
LILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIGMLVRSYNLNQQLLQRHYEEQNE
NAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIITCETLRDTAGVLKEAQREILLLTLV
EKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSERLPIERIQLRPHC
SIGVAMFYGDLTAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEAAQKRLTEESDILNAL
ENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLIDRIECCGLMVTVGHWVL
EESCRLLAAWQERGIMLPLSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRR
IDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPED
SSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLE
EK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgtaagtcgctcgttaacaatcaagcagatggcaatggtggcagccgttgtcctg
gtgttcgtttttattttttgcaccgttttgctgttccatctggtccaacagaatcgctat
aacacggctacgcaactggaaagcattgctcgctctgtccgcgaacccttatcttcagct
attttgaaaggcgatattcccgaagcggaagctattcttgccagcattaaaccggcaggc
gtggtcagccgtgccgatgtagtgctgcctaaccagttccaggcgctgcgtaaaagtttt
attccagagcgcccggtgccggtaatggttactcgcctgtttgagctaccggttcaaatc
tcgctgggcgtttactcgctcgaacgtccggcaaacccgcagccaattgcctatctggta
ctacaggcggattccttccgtatgtataagttcgtgatgagcaccctctcaacgttagtg
accatttacttacttttgtcgcttatcctgaccgtcgccatcagctggtgcattaaccgc
ctgattttgcatccgttacgcaatattgctcgcgaacttaacgccatcccagcccaggag
cttgttggtcaccaactggcattaccgcgtctgcatcaggacgatgaaatcggtatgttg
gtgcgcagttacaacctcaaccagcaattgctgcagcgccattatgaagaacagaacgaa
aatgcgatgcgcttcccggtatcggatttgccgaacaaagccttgctgatggagatgctg
gagcaggttgtcgcgcgtaaacaaaccaccgcgctgatgatcatcacctgtgaaaccctg
cgtgatactgcgggcgtgctgaaagaggcgcaacgagaaattctgctgctgacgctggtg
gaaaaactcaaatcggtactgtcgccacgtatgatcctcgcgcagattagcggttatgac
tttgctgtcattgccaacggtgtacaggaaccgtggcacgcaatcaccttaggtcagcaa
gtgctcactatcatgagcgagcgcctgccgattgaacgtattcaactccgtccgcactgt
agcattggcgtggcgatgttctacggcgatctcaccgccgaacagctttacagtcgcgct
atttctgcggcatttaccgctcgccataaaggcaagaatcagattcagttctttgatccg
cagcagatggaagccgcccagaagcggttgacggaagagagcgatatccttaatgcactg
gaaaatcatcagtttgctatttggttacagccacaggtcgagatgaccagcggaaaactg
gtcagtgcggaagtgttactgcgtatccagcaaccggatggcagttgggacctgccggat
ggcttaatcgatcgcattgagtgctgtgggctgatggttaccgtcggtcactgggtgctg
gaagagtcctgtcgattgcttgcagcctggcaagagcgcggcattatgctgcccttgtcg
gtaaacctctctgcgctgcaactgatgcacccaaatatggtggcggatatgctggaactg
ttaacccgctatcgcattcagccgggaacactgattctggaagtgacagaaagccgacgt
attgacgaccctcatgctgcggtggcaatcctccgtccgctgcgcaatgccggagttcgg
gtggcgctggatgatttcggcatgggctacgcagggctgcgtcagctgcagcatatgaaa
tcgttgccaatcgacgtactgaaaatcgacaaaatgtttgttgaaggcttgccggaagat
agcagcatgattgctgcaattatcatgctggcgcagagcctgaacttacaaatgattgcc
gaaggcgtggagactgaagcacaacgcgactggctggcaaaagcgggcgttggtattgcc
cagggcttcctttttgctcgcccactccctattgaaatcttcgaagagagttacctggaa
gaaaagtag
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